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[186674_at]

Description ZK637.2 /REP_DB=WormBase Gene ID /WP=CE00433 /TR=SW:P30629 /GB=CAA77449.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 56      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 1415.4
(1.7)
P 		1477
(3)
P 		1248.5
(-2)
P 		1201.2
(-3)
P 		276
B 1450
(1.9)
P 		1187.2
(-1.4)
P 		1535.1
(3)
P 		1060.2
(-3)
P 		475
C 1491.1
(3)
P 		1355.9
(0.1)
P 		1444.2
(2)
P 		1208.9
(-3)
P 		282
avr 1452.2
(3) 		1340
(0.7) 		1409.3
(2.1) 		1156.8
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1338
1 2 3 4 5 6 range
A 1773.3
(-2.3)
P 		1617.8
(-3)
P 		2948.5
(3)
P 		2561.3
(1.3)
P 		1636.3
(-2.9)
P 		1610.9
(-3)
P 		1338
B 1885.4
(-2.1)
P 		1978
(-1.6)
P 		2897.2
(3)
P 		2216
(-0.4)
P 		1828.7
(-2.4)
P 		1700.8
(-3)
P 		1196
C 1787.8
(-2.7)
P 		1865.8
(-2.1)
P 		1968.7
(-1.3)
P 		2524.3
(3)
P 		1749
(-3)
P 		1756.3
(-2.9)
P 		775
avr 1815.5
(-2.2) 		1820.5
(-2.1) 		2604.8
(3) 		2433.9
(1.9) 		1738
(-2.7) 		1689.3
(-3) 		916
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 515.4
(3)
P 		320.6
(-0.4)
P 		326.4
(-0.3)
P 		175.8
(-3)
P 		340
B 462.4
(3)
P 		293.2
(-1.3)
P 		355.7
(0.3)
P 		225.9
(-3)
P 		237
C 493.6
(2.8)
P 		389.8
(0.7)
P 		503.3
(3)
P 		203.8
(-3)
P 		300
avr 490.5
(3) 		334.5
(-0.2) 		395.1
(1) 		201.8
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 326.9
(-3)
P 		575.4
(1.6)
P 		642.1
(2.9)
P 		649.6
(3)
P 		493.8
(0.1)
P 		392.2
(-1.8)
P 		323
B 656
(-0.3)
P 		658.4
(-0.3)
P 		703.5
(1.5)
P 		586.9
(-3)
P 		743
(3)
P 		634.2
(-1.2)
P 		156
C 662.7
(3)
P 		569.3
(-0.5)
P 		501.1
(-3)
P 		507.6
(-2.8)
P 		566
(-0.6)
P 		587.9
(0.2)
P 		162
avr 548.5
(-2.2) 		601
(1.9) 		615.6
(3) 		581.4
(0.4) 		600.9
(1.9) 		538.1
(-3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6206
Sequence Type Exemplar sequence
Representative Public ID ZK637.2 NCBI
Target Description ZK637.2 /REP_DB=WormBase Gene ID /WP=CE00433 /TR=SW:P30629 /GB=CAA77449.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066560 NCBI Caenorhabditis elegans ZK637.2 (ZK637.2) mRNA, complete cds. 11/11 None
SNAP00000013198 ENSEMBL cdna:SNAP chromosome:CEL140:III:8887661:8888107:1 11/11 None
GENEFINDER00000013231 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8887661:8888101:1 11/11 None
ZK637.2.2 ENSEMBL cdna:known chromosome:CEL140:III:8887652:8890045:1 gene:ZK637.2 11/11 None
ZK637.2.1 ENSEMBL cdna:known chromosome:CEL140:III:8887654:8890051:1 gene:ZK637.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8887656-8888103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK637.2
Entrez Gene 176252 Entrez gene
SwissProt P30629 EMBL-EBI
WormBase CE32292 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5969.1.S1_S_AT similar to CG5323-PA cfa
DROSOPHILA_2:1630750_AT dm
DROSGENOME1:147448_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA77449 Hypothetical protein ZK637.2 [Caenorhabditis elegans] ref|NP_498961.2| ZK637.2 [Caenorhabditis elegans] sp|P30629|YOU2_CAEEL Hypothetical protein ZK637.2 in chromosome III 3.0E-79
blast CAA77449 Hypothetical protein ZK637.2 [Caenorhabditis elegans] ref|NP_498961.2| ZK637.2 [Caenorhabditis elegans] sp|P30629|YOU2_CAEEL Hypothetical protein ZK637.2 in chromosome III 9.0E-59
blast CAE57610 Hypothetical protein CBG00591 [Caenorhabditis briggsae] 2.0E-53
blast CAE57610 Hypothetical protein CBG00591 [Caenorhabditis briggsae] 4.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR008560 EMBL-EBI Eukaryotic protein of unknown function DUF842 6.3E-34
Pfam IPR008560 EMBL-EBI Eukaryotic protein of unknown function DUF842 3.6E-28
Sequence
Target Sequence 
>C. ELEGANS:186674_AT
caaactcaacgatggaggctactcaaatgaaagtaaagctggctgtcgatgagatgattg
acgatttggataagacctatttgagggatatgcagaagagcatgtttcagtgctcagctc
ggtgctgtgacaacaagaaaaccacacgcgatgctgtcgagaactgcgttgaaagctgca
acgatggcatgaaaaaggcgcaaggctatcttgaaaaagagctcggagggcttcaagacc
agctctcacgctgtgcaatgacttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTCAACGATGGAGGCTACTCA 291 191 17 Antisense
GTAAAGCTGGCTGTCGATGAGATGA 633 459 49 Antisense
GATGATTGACGATTTGGATAAGACC 528 409 69 Antisense
GAGCATGTTTCAGTGCTCAGCTCGG 150 389 114 Antisense
GTGCTCAGCTCGGTGCTGTGACAAC 328 479 126 Antisense
GAAAACCACACGCGATGCTGTCGAG 406 353 153 Antisense
GCGATGCTGTCGAGAACTGCGTTGA 437 289 164 Antisense
TTGAAAGCTGCAACGATGGCATGAA 670 701 185 Antisense
GAAAAAGGCGCAAGGCTATCTTGAA 350 355 207 Antisense
CTCGGAGGGCTTCAAGACCAGCTCT 386 229 238 Antisense
GCTCTCACGCTGTGCAATGACTTGC 30 299 258 Antisense
Sequence Source Affymetrix Proprietary Database