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[186672_at]

Description T23G5.6 /REP_DB=WormBase Gene ID /WP=CE00336 /TR=SW:Q03615 /GB=CAA79572.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 11      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 654.7
(3)
P 		539.7
(-2.7)
P 		533.7
(-3)
P 		630.7
(1.8)
P 		121
B 796.6
(3)
P 		528.7
(-3)
P 		549.3
(-2.5)
P 		677.8
(0.3)
P 		268
C 804.3
(3)
P 		589
(-1.6)
P 		525.8
(-3)
P 		653.1
(-0.3)
P 		279
avr 751.9
(3) 		552.5
(-2.5) 		536.3
(-3) 		653.9
(0.3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 646.2
(1.5)
P 		735.7
(3)
P 		646.7
(1.5)
P 		619.4
(1)
P 		451.2
(-1.9)
P 		388.2
(-3)
P 		348
B 697
(3)
P 		650.8
(2.1)
P 		694.9
(3)
P 		529.7
(-0.3)
P 		481.8
(-1.2)
P 		388.5
(-3)
P 		309
C 685.7
(3)
P 		682.6
(2.9)
P 		618.1
(1.6)
P 		680.9
(2.9)
P 		397.5
(-3)
P 		453.7
(-1.8)
P 		288
avr 676.3
(2.7) 		689.7
(3) 		653.2
(2.2) 		610
(1.3) 		443.5
(-2.3) 		410.1
(-3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 238.4
(3)
P 		117.1
(-2)
P 		139.5
(-1.1)
P 		92.3
(-3)
P 		146
B 254
(3)
P 		130.6
(-2.8)
P 		127.3
(-3)
P 		144.4
(-2.2)
P 		127
C 266.3
(3)
P 		169.3
(-0.7)
P 		183.3
(-0.2)
P 		110.1
(-3)
P 		156
avr 252.9
(3) 		139
(-2) 		150
(-1.5) 		115.6
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 119.1
(-2.1)
P 		261.7
(3)
P 		140.8
(-1.3)
P 		157.1
(-0.8)
P 		136.2
(-1.5)
P 		94.5
(-3)
P 		167
B 242.5
(3)
P 		216.6
(1.5)
P 		168.8
(-1.3)
P 		140.3
(-3)
P 		195.7
(0.3)
P 		144.9
(-2.7)
P 		102
C 254.2
(3)
P 		208.3
(0.8)
P 		157.3
(-1.6)
P 		136.9
(-2.6)
P 		128.6
(-3)
P 		151.9
(-1.9)
P 		126
avr 205.3
(1.6) 		228.9
(3) 		155.6
(-1.5) 		144.8
(-2.1) 		153.5
(-1.6) 		130.4
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7835
Sequence Type Exemplar sequence
Representative Public ID T23G5.6 NCBI
Target Description T23G5.6 /REP_DB=WormBase Gene ID /WP=CE00336 /TR=SW:Q03615 /GB=CAA79572.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066641 NCBI Caenorhabditis elegans T23G5.6 (T23G5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000022707 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9239088:9242099:1 11/11 None
SNAP00000022701 ENSEMBL cdna:SNAP chromosome:CEL140:III:9240280:9241635:1 11/11 None
T23G5.6 ENSEMBL cdna:known chromosome:CEL140:III:9240272:9242399:1 gene:T23G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9240320-9241519(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G5.6
Entrez Gene 176303 Entrez gene
SwissProt Q03615 EMBL-EBI
WormBase CE37794 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79572 Hypothetical protein T23G5.6 [Caenorhabditis elegans] ref|NP_499042.2| T23G5.6 [Caenorhabditis elegans] sp|Q03615|YN06_CAEEL Hypothetical protein T23G5.6 in chromosome III 1.0E-175
blast CAE65259 Hypothetical protein CBG10150 [Caenorhabditis briggsae] 1.0E-160
blast CAE65259 Hypothetical protein CBG10150 [Caenorhabditis briggsae] 1.0E-151
blast CAA79572 Hypothetical protein T23G5.6 [Caenorhabditis elegans] ref|NP_499042.2| T23G5.6 [Caenorhabditis elegans] sp|Q03615|YN06_CAEEL Hypothetical protein T23G5.6 in chromosome III 1.0E-151
blast CAE65259 Hypothetical protein CBG10150 [Caenorhabditis briggsae] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:186672_AT
cgatgcaccatcttcgttggatctaatgagacggattttccaagcggaaatatcgagaga
aatccatcagattatggagaggcatactagaacaacgctattaccagctatcgaaaatct
ccgcaaaaatgggcatgttgttgacgaatcagttttgaatggtttgtactgtaacatttt
ggaggctgcaaagaagccatatcaaaaagatccggagcctatgccaccgatttgtacaaa
tggaaatgggttccttgatatcaacagtcaagaacatgagaataatttaaagagaggata
cgaatcggatagctcagacgtgtctggagtcagccactgctccgatgctaaaagacgacg
aggtcgtccacgtaaagatgaagaagcatatcgactagaaatgacgccaccgacaatgaa
cgaagtcattcggtggaatccggacagaatcgatgtgaacacccgttttataacggcgac
aaaaattgcgcaagtgatgggaatgcccccgtcgattctgttcaacaagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGCACCATCTTCGTTGGATCTA 424 249 135 Antisense
GAACAACGCTATTACCAGCTATCGA 296 353 224 Antisense
AAAAAGATCCGGAGCCTATGCCACC 248 127 338 Antisense
GCCTATGCCACCGATTTGTACAAAT 694 281 351 Antisense
GAATCGGATAGCTCAGACGTGTCTG 380 329 436 Antisense
CAGACGTGTCTGGAGTCAGCCACTG 402 205 449 Antisense
GCCACTGCTCCGATGCTAAAAGACG 290 279 467 Antisense
GAAATGACGCCACCGACAATGAACG 263 361 532 Antisense
GAATCGATGTGAACACCCGTTTTAT 230 329 581 Antisense
GCAAGTGATGGGAATGCCCCCGTCG 274 321 624 Antisense
CCCCGTCGATTCTGTTCAACAAGTA 200 259 641 Antisense
Sequence Source Affymetrix Proprietary Database