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[186671_s_at]

Description Y38C1AB.3 /REP_DB=WormBase Gene ID /WP=CE18182 /TR=Q9N2L3 /GB=AAF60496.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 11.7
(-1.2)
A 		1.4
(-3)
A 		15.2
(-0.5)
A 		35.1
(3)
P 		34
B 7.9
(0.3)
A 		2.1
(-3)
A 		12.7
(3)
A 		11.8
(2.5)
A 		11
C 6.3
(-1.8)
A 		1.3
(-3)
A 		3.3
(-2.5)
A 		27.1
(3)
A 		26
avr 8.6
(-1.2) 		1.6
(-3) 		10.4
(-0.7) 		24.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 53.4
(3)
P 		17.8
(-1.1)
A 		1
(-3)
A 		28.6
(0.2)
A 		1.5
(-2.9)
A 		1.8
(-2.9)
A 		52
B 1.2
(-3)
A 		1.1
(-3)
A 		1.5
(-2.9)
A 		25.2
(3)
A 		1.5
(-2.9)
A 		17.1
(1)
A 		24
C 1.2
(-2.9)
A 		0.6
(-3)
A 		3.5
(-2.3)
A 		27
(3)
A 		1.1
(-2.9)
A 		1.2
(-2.9)
A 		26
avr 18.6
(1) 		6.5
(-1.8) 		2
(-2.9) 		26.9
(3) 		1.4
(-3) 		6.7
(-1.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.3
(2)
A 		0.3
(-3)
A 		4
(1.6)
A 		5.1
(3)
P 		5
B 2.5
(2)
A 		0.5
(-3)
A 		2.9
(3)
A 		2.5
(2)
A 		2
C 2.1
(-0.6)
A 		0.4
(-3)
A 		1.2
(-1.9)
A 		4.6
(3)
A 		4
avr 3
(1.2) 		0.4
(-3) 		2.7
(0.7) 		4.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.8
(3)
P 		6.3
(0.8)
A 		0.2
(-3)
A 		7.2
(1.4)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		10
B 0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6.7
(3)
A 		0.6
(-2.8)
A 		6.4
(2.7)
A 		6
C 0.5
(-2.7)
A 		0.2
(-3)
A 		0.9
(-2.2)
A 		5.4
(3)
A 		0.4
(-2.8)
A 		0.4
(-2.8)
A 		5
avr 3.6
(0.2) 		2.3
(-1.2) 		0.5
(-3) 		6.4
(3) 		0.5
(-3) 		2.4
(-1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186671_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10620
Sequence Type Exemplar sequence
Representative Public ID Y38C1AB.3 NCBI
Target Description Y38C1AB.3 /REP_DB=WormBase Gene ID /WP=CE18182 /TR=Q9N2L3 /GB=AAF60496.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067452(11), NM_067453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067452 NCBI Caenorhabditis elegans Y38C1AB.3 (Y38C1AB.3) mRNA, complete cds. 11/11 None
NM_067453 NCBI Caenorhabditis elegans Y38C1AB.7 (Y38C1AB.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032151 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:21493:23198:1 11/11 None
GENEFINDER00000032155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:24683:26388:-1 11/11 None
Y38C1AB.3 ENSEMBL cdna:known chromosome:CEL140:IV:21493:23198:1 gene:Y38C1AB.3 11/11 None
Y38C1AB.7 ENSEMBL cdna:known chromosome:CEL140:IV:24683:26388:-1 gene:Y38C1AB.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032138 5/11 Cross Hyb Matching Probes None
SNAP00000032139 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:21492-23198(+) 100.0 100.0
chrIV:24682-26388(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y38C1AB.3
Y38C1AB.7
Entrez Gene 189645 Entrez gene
189647 Entrez gene
SwissProt Q9N2L3 EMBL-EBI
WormBase CE18182 Wormbase
CE18182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60495 Hypothetical protein Y38C1AB.7 [Caenorhabditis elegans] gb|AAF60496.1| Hypothetical protein Y38C1AB.3 [Caenorhabditis elegans] ref|NP_499854.1| Y38C1AB.7 [Caenorhabditis elegans] ref|NP_499853.1| Y38C1AB.3 [Caenorhabditis elegans] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:186671_S_AT
agtttcacttccaaataattcactggaaaaattaatggttaaacactttgcaaattgttt
tgtcgcacttcatacaatgaattcactagacgaattggcagcaagtgcgccgaaatttgt
ggctgactttaagcaggctattgggaataaaaaaactttgaaagaattgcatgacaattt
caaatcaagcgacactaaacaacagggattaaatagaaaattgacaaataaaatggaaag
aaatcgatcagaaatgaaacagttcaaaatggaaatgatgtcttcatttaatggcttaaa
acaaaatatggacactaaaatggaggaaatgatgcagctgatgagggcactgatacagga
ccttacgagtcaaaaactagctcaaaatccagaaagttccaagtgtagttttccaaacta
tggcctggaaattcagaaaaagtttgaagacatgattcaaaacatgaaatctcagactgg
aagtgtttttgaattgaaattgaaagaaatcgagcaacttgaagccgaggccgaaaacac
aattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCACTTCCAAATAATTCACTG 501 61 144 Antisense
CAAATTGTTTTGTCGCACTTCATAC 363 193 194 Antisense
GACGAATTGGCAGCAAGTGCGCCGA 35 381 232 Antisense
AGTGCGCCGAAATTTGTGGCTGACT 346 59 247 Antisense
GTGGCTGACTTTAAGCAGGCTATTG 416 489 262 Antisense
GACAATTTCAAATCAAGCGACACTA 36 365 316 Antisense
GATGCAGCTGATGAGGGCACTGATA 392 413 474 Antisense
GGCACTGATACAGGACCTTACGAGT 298 535 489 Antisense
CTAGCTCAAAATCCAGAAAGTTCCA 430 225 520 Antisense
GTAGTTTTCCAAACTATGGCCTGGA 589 447 548 Antisense
AGCCGAGGCCGAAAACACAATTCCA 215 73 666 Antisense
Sequence Source Affymetrix Proprietary Database