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[186670_at]

Description Y102A5C.26 /REP_DB=WormBase Gene ID /WP=CE20398 /TR=Q9XX68 /GB=CAA20967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 39      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-3)
A 		0.6
(-3)
A 		0.7
(-2.3)
A 		1.5
(3)
A 		1
B 2.1
(3)
A 		0.8
(-1.3)
A 		0.3
(-3)
A 		1.2
(-0)
A 		2
C 7.2
(3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		1.9
(-2.2)
A 		6
avr 3.3
(3) 		0.8
(-2.8) 		0.7
(-3) 		1.5
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		0.8
(-2.9)
A 		0.7
(-2.9)
A 		0.4
(-3)
A 		5.4
(-1.8)
A 		25.4
(3)
A 		25
B 1.6
(-1.1)
A 		1
(-2.2)
A 		0.8
(-2.6)
A 		3.7
(3)
A 		0.6
(-3)
A 		1
(-2.2)
A 		3
C 0.7
(0.6)
A 		0.8
(1.8)
A 		0.4
(-3)
A 		0.9
(3)
A 		0.5
(-1.8)
A 		0.6
(-0.6)
A 		1
avr 1.1
(-2.6) 		0.9
(-2.8) 		0.6
(-3) 		1.7
(-2.2) 		2.2
(-1.9) 		9
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.2
(3)
A 		0.1
(-3)
A 		0.2
(3)
A 		0.2
(3)
A 		0
B 0.7
(3)
A 		0.2
(-2)
A 		0.1
(-3)
A 		0.2
(-2)
A 		1
C 2.4
(3)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		2
avr 1.1
(3) 		0.2
(-3) 		0.2
(-3) 		0.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.2
(-2.9)
A 		0.3
(-2.8)
A 		0.1
(-3)
A 		0.1
(-3)
A 		1.6
(-1.5)
A 		6.2
(3)
A 		6
B 0.6
(-0)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.4
(-1.5)
A 		1
C 0.2
(3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0.2
(3)
A 		0
avr 0.3
(-2.5) 		0.3
(-2.5) 		0.1
(-3) 		0.4
(-2.2) 		0.7
(-1.4) 		2.3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13622
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.26 NCBI
Target Description Y102A5C.26 /REP_DB=WormBase Gene ID /WP=CE20398 /TR=Q9XX68 /GB=CAA20967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074895
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y102A5C.26 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16986622:16987973:1 gene:Y102A5C.26 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074893 1/11 Cross Hyb Matching Probes A 
NM_074895 1/11 Cross Hyb Matching Probes A 
SNAP00000003163 3/11 Cross Hyb Matching Probes None
GENEFINDER00000003172 4/11 Cross Hyb Matching Probes None
GENEFINDER00000030299 1/11 Cross Hyb Matching Probes None
Y102A5C.23 1/11 Cross Hyb Matching Probes A 
Y102A5C.25 1/11 Cross Hyb Matching Probes A 
T27C5.4 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16986621-16987971(+) 100.0 100.0
chrV:16983245-17410073(+) 90.22 92.44
Public Domain and Genome References
Ensembl Y102A5C.26
Sequence
Target Sequence 
>C. ELEGANS:186670_AT
tcacaacattagtttcgtatgggttattcgttttttagttttttttatatattcactcaa
cataattactcaagccttccacgtgttactgtttgtactagcagttgaacggttttttct
ctactttttcccatccagtgaaaaactattcaaatcttcgcgaaataaaatcaaacactt
gtactttttgataattataacgtgctctatcaatgatgttcttgtatttttctcagccat
tttatatattccaatcgtactaagtattcgaaagttggtgaatttacagtcagctcaacg
ttccaagccgcataaatatattttcttgcaaacaatgatggttttcacatttaaatcgat
tcaagttctcgtatacctcatgacaaatcataatggtatttccttacaaagtttattcat
ttgtgctataacagtgtcagacattatcaccacaccgttaattgtccaaatgtcatacct
gtcatgcaataagaggaacatgaagcttttgctttcctccatcagtgctcgaaagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAACATTAGTTTCGTATGGGTT 361 627 297 Antisense
TTTTTTTTATATATTCACTCAACAT 644 675 335 Antisense
CTGTTTGTACTAGCAGTTGAACGGT 520 237 385 Antisense
GCAGTTGAACGGTTTTTTCTCTACT 623 311 397 Antisense
TCTACTTTTTCCCATCCAGTGAAAA 175 615 416 Antisense
TTTTGATAATTATAACGTGCTCTAT 398 677 482 Antisense
GTATTTTTCTCAGCCATTTTATATA 186 453 520 Antisense
TATATTCCAATCGTACTAAGTATTC 605 659 541 Antisense
GTATTTCCTTACAAAGTTTATTCAT 185 453 692 Antisense
TTGTGCTATAACAGTGTCAGACATT 344 709 717 Antisense
TCCTCCATCAGTGCTCGAAAGTTGT 205 593 811 Antisense
Sequence Source Affymetrix Proprietary Database