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[186669_at]

Description ZK637.9 /REP_DB=WormBase Gene ID /WP=CE00439 /TR=SW:P30636 /GB=CAA77455.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 28      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 75.9
(-1.1)
A 		94.5
(0.2)
A 		46
(-3)
A 		138.2
(3)
A 		92
B 82.7
(0.8)
A 		94
(3)
A 		62.8
(-3)
A 		79.2
(0.2)
A 		31
C 80.5
(0.6)
P 		78.2
(0.4)
A 		50.8
(-3)
A 		99.7
(3)
A 		49
avr 79.7
(0) 		88.9
(1.1) 		53.2
(-3) 		105.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 84.2
(-2.4)
A 		74
(-3)
A 		178.2
(3)
P 		99.9
(-1.5)
A 		148.7
(1.3)
A 		134.9
(0.5)
P 		104
B 68.5
(-3)
A 		109.4
(-1.3)
A 		134
(-0.2)
P 		108.2
(-1.3)
A 		157.3
(0.7)
P 		210.8
(3)
P 		142
C 93.8
(-3)
A 		116.5
(-1.8)
P 		130.8
(-1)
P 		114.4
(-1.9)
A 		140.3
(-0.5)
P 		204.6
(3)
P 		111
avr 82.2
(-3) 		100
(-1.9) 		147.7
(0.9) 		107.5
(-1.5) 		148.8
(0.9) 		183.4
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 27.6
(3)
A 		20.5
(0.3)
A 		12
(-3)
A 		20.2
(0.2)
A 		16
B 26.4
(3)
A 		23.2
(1.4)
A 		14.5
(-3)
A 		16.9
(-1.8)
A 		12
C 26.6
(3)
P 		22.5
(0.5)
A 		17.7
(-2.4)
A 		16.8
(-3)
A 		10
avr 26.9
(3) 		22.1
(0.6) 		14.7
(-3) 		18
(-1.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 15.5
(-3)
A 		26.3
(-0.8)
A 		38.8
(1.8)
P 		25.3
(-1)
A 		44.9
(3)
A 		32.8
(0.5)
P 		29
B 23.8
(-3)
A 		36.4
(-1.6)
A 		32.5
(-2)
P 		28.7
(-2.5)
A 		63.9
(1.4)
P 		78.6
(3)
P 		55
C 34.8
(-1.4)
A 		35.6
(-1.3)
P 		33.3
(-1.6)
P 		23
(-3)
A 		45.4
(-0)
P 		68.5
(3)
P 		46
avr 24.7
(-3) 		32.8
(-1.6) 		34.9
(-1.3) 		25.7
(-2.8) 		51.4
(1.5) 		60
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7819
Sequence Type Exemplar sequence
Representative Public ID ZK637.9 NCBI
Target Description ZK637.9 /REP_DB=WormBase Gene ID /WP=CE00439 /TR=SW:P30636 /GB=CAA77455.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027853(11), NM_001027852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027853 NCBI Caenorhabditis elegans Thiamine PyrophosphoKinase family member (tpk-1) (tpk-1) mRNA, complete cds. 11/11 None
NM_001027852 NCBI Caenorhabditis elegans Thiamine PyrophosphoKinase family member (tpk-1) (tpk-1) mRNA, complete cds. 11/11 None
SNAP00000013208 ENSEMBL cdna:SNAP chromosome:CEL140:III:8912053:8913340:1 11/11 None
GENEFINDER00000013224 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8912053:8913340:1 11/11 None
ZK637.9a ENSEMBL cdna:known chromosome:CEL140:III:8912053:8913340:1 gene:ZK637.9 11/11 None
ZK637.9b ENSEMBL cdna:known chromosome:CEL140:III:8912053:8913340:1 gene:ZK637.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8912048-8913268(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK637.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46594 Hypothetical protein ZK637.9b [Caenorhabditis elegans] ref|NP_001023024.1| Thiamine PyrophosphoKinase family member (tpk-1) [Caenorhabditis elegans] sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 (Thiamine pyrophosphokinase 1) (TPK1) 1.0E-127
blast AAS21678 thiamine pyrophosphokinase [Caenorhabditis elegans] emb|CAA77455.3| Hypothetical protein ZK637.9a [Caenorhabditis elegans] ref|NP_001023023.1| Thiamine PyrophosphoKinase family member (tpk-1) [Caenorhabditis elegans] 1.0E-119
blast AAS21678 thiamine pyrophosphokinase [Caenorhabditis elegans] emb|CAA77455.3| Hypothetical protein ZK637.9a [Caenorhabditis elegans] ref|NP_001023023.1| Thiamine PyrophosphoKinase family member (tpk-1) [Caenorhabditis elegans] 1.0E-116
blast CAI46594 Hypothetical protein ZK637.9b [Caenorhabditis elegans] ref|NP_001023024.1| Thiamine PyrophosphoKinase family member (tpk-1) [Caenorhabditis elegans] sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 (Thiamine pyrophosphokinase 1) (TPK1) 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR007371 EMBL-EBI Thiamin pyrophosphokinase, catalytic domain 1.8E-48
Pfam IPR007373 EMBL-EBI Thiamin pyrophosphokinase, vitamin B1 binding domain 1.8E-5
Pfam IPR007371 EMBL-EBI Thiamin pyrophosphokinase, catalytic domain 2.7E-46
Pfam IPR007373 EMBL-EBI Thiamin pyrophosphokinase, vitamin B1 binding domain 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:186669_AT
gaggattcgtgtgcatcagtatgtatttggcttaacggtgaacctacggcaatcagcaat
cgcgctgaaaatttatggaataaggccaaatatcgagttgcaactgatggagctgttaat
gagattcttaaaagaaagagtttcgtcgaatggcctcatattatctgcggagatttcgat
tcaataaataaacagattgatacaaaaaatgcaaaagtcgtccatctgcctgatcaagac
tacacagatctctcgaagagcgttcagtggtgcttagagcagaaaacactaacaagctgg
gaattcgagaatatcgttgttctaggaggtctcaatggacgatttgatcacaccatgtca
acgttatcatctttaataagattcgttgattctcaaactcctggggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATTCGTGTGCATCAGTATGTA 341 403 46 Antisense
TTGGCTTAACGGTGAACCTACGGCA 21 487 72 Antisense
AACCTACGGCAATCAGCAATCGCGC 492 147 86 Antisense
GTCGAATGGCCTCATATTATCTGCG 708 473 190 Antisense
AATGCAAAAGTCGTCCATCTGCCTG 707 165 253 Antisense
GTCCATCTGCCTGATCAAGACTACA 406 477 265 Antisense
AGACTACACAGATCTCTCGAAGAGC 254 71 282 Antisense
GAGCGTTCAGTGGTGCTTAGAGCAG 291 387 303 Antisense
AATATCGTTGTTCTAGGAGGTCTCA 129 173 355 Antisense
GATCACACCATGTCAACGTTATCAT 683 421 391 Antisense
TTGATTCTCAAACTCCTGGGGATTC 692 701 431 Antisense
Sequence Source Affymetrix Proprietary Database