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[186668_s_at] --- /// --- /// ---

Description VH15N14R.1 /REP_DB=WormBase Gene ID /WP=CE20120 /TR=Q9GNJ5 /GB=CAB76719.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 29
(-1.7)
A 		15.4
(-3)
A 		76.7
(3)
A 		26.7
(-1.9)
A 		61
B 44.4
(2.1)
A 		26.3
(-1.1)
A 		15.8
(-3)
A 		49.6
(3)
A 		34
C 37.2
(-1.1)
A 		39.7
(-1)
A 		8.3
(-3)
A 		101.2
(3)
A 		93
avr 36.9
(-1.2) 		27.1
(-3) 		33.6
(-1.8) 		59.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 90.9
(1)
A 		25.7
(-2.5)
A 		16.9
(-3)
A 		35.4
(-2)
A 		22.4
(-2.7)
A 		128.5
(3)
A 		112
B 18.5
(-1.6)
A 		20.3
(-1.1)
A 		23.2
(-0.2)
A 		24.8
(0.3)
A 		33.8
(3)
A 		13.9
(-3)
A 		20
C 24
(1.4)
A 		23
(1)
A 		28
(3)
A 		13.3
(-3)
A 		16.8
(-1.6)
A 		16.5
(-1.7)
A 		15
avr 44.5
(1.3) 		23
(-2.9) 		22.7
(-3) 		24.5
(-2.6) 		24.3
(-2.7) 		53
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.5
(-0.4)
A 		3.4
(-3)
A 		20.1
(3)
A 		3.9
(-2.8)
A 		17
B 14.2
(3)
A 		6.5
(-1.4)
A 		3.7
(-3)
A 		10.6
(0.9)
A 		11
C 12.3
(1)
A 		11.4
(0.6)
A 		2.9
(-3)
A 		17.1
(3)
A 		14
avr 12.3
(3) 		7.1
(-3) 		8.9
(-0.9) 		10.5
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16.8
(-0.2)
A 		9.1
(-1.8)
A 		3.7
(-3)
A 		9
(-1.8)
A 		6.8
(-2.3)
A 		31.3
(3)
A 		28
B 6.4
(-2.2)
A 		6.8
(-1.9)
A 		5.6
(-2.7)
A 		6.6
(-2)
A 		13.7
(3)
A 		5.2
(-3)
A 		9
C 8.9
(3)
A 		7
(1.2)
A 		7.1
(1.3)
A 		2.7
(-3)
A 		5.4
(-0.4)
A 		5.5
(-0.3)
A 		6
avr 10.7
(0.7) 		7.6
(-1.5) 		5.5
(-3) 		6.1
(-2.6) 		8.6
(-0.8) 		14
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2268
Sequence Type Exemplar sequence
Representative Public ID VH15N14R.1 NCBI
Target Description VH15N14R.1 /REP_DB=WormBase Gene ID /WP=CE20120 /TR=Q9GNJ5 /GB=CAB76719.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069788(11), NM_069789(11), NM_059754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069788 NCBI Caenorhabditis elegans Y24F12A.3 (Y24F12A.3) mRNA, complete cds. 11/11 A 
NM_069789 NCBI Caenorhabditis elegans Y24F12A.4 (Y24F12A.4) mRNA, complete cds. 11/11 A 
NM_059754 NCBI Caenorhabditis elegans VH15N14R.1 (VH15N14R.1) mRNA, complete cds. 11/11 None
GENEFINDER00000028618 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7789629:7790596:-1 10/11 None
VH15N14R.1 ENSEMBL cdna:known chromosome:CEL140:I:7789381:7790674:-1 gene:VH15N14R.1 11/11 None
Y24F12A.3 ENSEMBL cdna:known chromosome:CEL140:IV:11608870:11610233:1 gene:Y24F12A.3 11/11 A 
Y24F12A.4 ENSEMBL cdna:known chromosome:CEL140:IV:11616579:11617954:-1 gene:Y24F12A.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028617 4/11 Cross Hyb Matching Probes None
SNAP00000019928 3/11 Cross Hyb Matching Probes None
SNAP00000037635 4/11 Cross Hyb Matching Probes None
SNAP00000037637 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037639 7/11 Cross Hyb Matching Probes None
SNAP00000038922 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11608875-11610397(+) 78.18 98.65
chrI:7789311-7790605(-) 72.94 100.0
chrIV:11616202-11617960(-) 83.56 98.06
Public Domain and Genome References
Gene Title


Ensembl VH15N14R.1
Y24F12A.3
Y24F12A.4
Entrez Gene 189068 Entrez gene
189533 Entrez gene
189534 Entrez gene
SwissProt Q9GNJ5 EMBL-EBI
Q9U2Q6 EMBL-EBI
Q9U2Q5 EMBL-EBI
WormBase CE20120 Wormbase
CE24194 Wormbase
CE24195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60326 Hypothetical protein Y24F12A.3 [Caenorhabditis elegans] ref|NP_502189.1| Y24F12A.3 [Caenorhabditis elegans] 1.0E-116
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 1.0E-113
blast CAB76736 Hypothetical protein VH15N14R.1 [Caenorhabditis elegans] emb|CAB76719.1| Hypothetical protein VH15N14R.1 [Caenorhabditis elegans] ref|NP_492155.1| VH15N14R.1 [Caenorhabditis elegans] 1.0E-112
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 1.0E-93
blast CAB60326 Hypothetical protein Y24F12A.3 [Caenorhabditis elegans] ref|NP_502189.1| Y24F12A.3 [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:186668_S_AT
aactcctattcaaaactatcgccaccaactgcatcaacaacaagcaacaacagcacgacg
tagacggaaaggaagaggacgacgacgaggaggtacgagtcttcttcccaggaggccaaa
gaggtcttctgatggagagggggagagctgaccgcgtgctcttctacttcccaggagcaa
acttttcgaataggcgaccccatttcataatggaacgaacgacgacggaaggaagaaacc
ggtggcgatggtctggagttgaattggatcgagatcacactcacaagatctcgaaccaca
atggattgagatggaacgatggactcgaatggaacaatcgggatcagcggacagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCCTATTCAAAACTATCGCCAC 193 141 80 Antisense
TCAAAACTATCGCCACCAACTGCAT 308 629 89 Antisense
GCCACCAACTGCATCAACAACAAGC 463 279 100 Antisense
CGAGGAGGTACGAGTCTTCTTCCCA 218 249 165 Antisense
TCCCAGGAGGCCAAAGAGGTCTTCT 385 597 185 Antisense
TGGAGAGGGGGAGAGCTGACCGCGT 611 541 212 Antisense
CTCTTCTACTTCCCAGGAGCAAACT 73 229 238 Antisense
GAAACCGGTGGCGATGGTCTGGAGT 426 357 314 Antisense
GAATTGGATCGAGATCACACTCACA 478 323 340 Antisense
TCACACTCACAAGATCTCGAACCAC 103 629 354 Antisense
GGAACAATCGGGATCAGCGGACAGG 355 527 410 Antisense
Sequence Source Affymetrix Proprietary Database