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[186667_s_at]

Description Y37E11B.3 /REP_DB=WormBase Gene ID /WP=CE19613 /TR=Q9TYN4 /GB=AAD12823.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 78      4grp_total > 28      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 171.1
(0.3)
P 		176.5
(0.9)
A 		142.6
(-3)
P 		195.2
(3)
P 		53
B 153.4
(-2.2)
P 		195.5
(3)
P 		147.2
(-3)
A 		195.9
(3)
P 		49
C 157
(0.8)
P 		145.5
(0.1)
P 		91.7
(-3)
M 		195.7
(3)
P 		104
avr 160.5
(-0.1) 		172.5
(1) 		127.2
(-3) 		195.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 206.7
(-1)
P 		153.5
(-3)
P 		185.8
(-1.8)
P 		164.2
(-2.6)
P 		182.3
(-1.9)
P 		312.2
(3)
P 		159
B 179.8
(-2.6)
P 		179.4
(-2.6)
P 		186.7
(-2.4)
P 		166
(-3)
P 		216.1
(-1.5)
P 		363.4
(3)
P 		197
C 127.3
(-3)
P 		182.1
(-1.1)
P 		193.4
(-0.7)
P 		161.8
(-1.8)
P 		262.2
(1.8)
P 		296.8
(3)
P 		170
avr 171.3
(-2.7) 		171.7
(-2.7) 		188.6
(-2.1) 		164
(-3) 		220.2
(-0.9) 		324.1
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 62.3
(3)
P 		38.3
(-1.3)
A 		37.3
(-1.5)
P 		28.6
(-3)
P 		34
B 48.9
(3)
P 		48.3
(2.8)
P 		34.1
(-3)
A 		41.7
(0.1)
P 		15
C 52
(3)
P 		41.8
(-0.1)
P 		32
(-3)
M 		33
(-2.7)
P 		20
avr 54.4
(3) 		42.8
(-0.5) 		34.5
(-3) 		34.4
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 38.1
(-3)
P 		54.6
(-0.4)
P 		40.5
(-2.6)
P 		41.6
(-2.4)
P 		55
(-0.3)
P 		76
(3)
P 		38
B 62.6
(-1.8)
P 		59.7
(-2)
P 		45.3
(-2.9)
P 		44
(-3)
P 		87.8
(-0.1)
P 		135.5
(3)
P 		92
C 47.2
(-1.7)
P 		55.6
(-0.9)
P 		49.2
(-1.5)
P 		32.5
(-3)
P 		84.8
(1.7)
P 		99.4
(3)
P 		67
avr 49.3
(-2.1) 		56.6
(-1.4) 		45
(-2.5) 		39.4
(-3) 		75.9
(0.4) 		103.6
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186667_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10816
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.3 NCBI
Target Description Y37E11B.3 /REP_DB=WormBase Gene ID /WP=CE19613 /TR=Q9TYN4 /GB=AAD12823.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067976 NCBI Caenorhabditis elegans Y37E11B.3 (Y37E11B.3) mRNA, complete cds. 11/11 None
SNAP00000044692 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3581063:3593594:-1 11/11 None
GENEFINDER00000044704 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3581063:3582893:-1 11/11 None
Y37E11B.3 ENSEMBL cdna:known chromosome:CEL140:IV:3581063:3582904:-1 gene:Y37E11B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3581068-3582899(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11B.3
Entrez Gene 177119 Entrez gene
SwissProt Q9TYN4 EMBL-EBI
WormBase CE19613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12824 Taf (tbp-associated transcription factor) family protein 2 [Caenorhabditis elegans] ref|NP_500378.1| TAF (TBP-associated transcription factor) family member (taf-2) [Caenorhabditis elegans] 0.0
blast CAE63786 Hypothetical protein CBG08327 [Caenorhabditis briggsae] 0.0
blast XP_393397 PREDICTED: similar to ENSANGP00000016472 [Apis mellifera] 1.0E-160
blast AAD12823 Hypothetical protein Y37E11B.3 [Caenorhabditis elegans] ref|NP_500377.1| Y37E11B.3 [Caenorhabditis elegans] 3.0E-73
blast CAE63787 Hypothetical protein CBG08328 [Caenorhabditis briggsae] 3.0E-22
blast XP_691017 PREDICTED: similar to putative protein, with a coiled coil domain, of bilaterial origin (17.4 kD) (4E346) [Danio rerio] 8.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 5.0E-6
Sequence
Target Sequence 
>C. ELEGANS:186667_S_AT
gtcaacttcaactgaaagcccggacaccccgaccacttcccagccacttctttcaaataa
gcagacgtccttcgtagtcgacgatttggaagaacggatccgtgaaagtgcacggatttc
cagcccgaaacgggccgccgccgccgggctgcccgatccgaaaattctggtggatctgga
gacgcataccaaggaaattgtaaacaatatggacactatgcttagggatatgagaggttc
ccttcacggaatgtcggatctcacactggaatccctgcaatgctacaattctggcgtcga
aaaagcgtgcgacgaggccgatgcgaacgtcaaatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACTTCAACTGAAAGCCCGGAC 308 447 15 Antisense
TTCCCAGCCACTTCTTTCAAATAAG 69 699 51 Antisense
TAAGCAGACGTCCTTCGTAGTCGAC 436 599 72 Antisense
GTGAAAGTGCACGGATTTCCAGCCC 75 481 116 Antisense
CTGCCCGATCCGAAAATTCTGGTGG 549 235 163 Antisense
GGATATGAGAGGTTCCCTTCACGGA 51 511 240 Antisense
CCCTTCACGGAATGTCGGATCTCAC 191 259 254 Antisense
ATCTCACACTGGAATCCCTGCAATG 693 31 272 Antisense
TGCAATGCTACAATTCTGGCGTCGA 240 577 290 Antisense
AAAAAGCGTGCGACGAGGCCGATGC 597 129 314 Antisense
AGGCCGATGCGAACGTCAAATCCAC 531 53 329 Antisense
Sequence Source Affymetrix Proprietary Database