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[186666_at]

Description Y105C5B.25 /REP_DB=WormBase Gene ID /WP=CE24075 /TR=Q9NAL8 /GB=CAB54373.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 123.3
(3)
A 		65.4
(-2.5)
A 		60.6
(-3)
A 		106.3
(1.4)
A 		63
B 116.8
(3)
A 		85.6
(1.3)
A 		6.2
(-3)
A 		103.2
(2.3)
A 		111
C 107.5
(3)
A 		52.8
(-2.4)
A 		46.7
(-3)
A 		83.8
(0.7)
A 		61
avr 115.9
(3) 		67.9
(-0.7) 		37.8
(-3) 		97.8
(1.6) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 84.8
(3)
A 		58
(-0.4)
A 		80.4
(2.4)
A 		48
(-1.7)
A 		37.7
(-3)
A 		79.6
(2.3)
A 		47
B 69
(2.3)
A 		47
(-3)
A 		71.7
(3)
A 		62
(0.6)
A 		53.7
(-1.4)
A 		67.5
(2)
A 		25
C 53.6
(-0.2)
A 		82.6
(3)
A 		80.1
(2.7)
A 		64.8
(1)
A 		28.6
(-3)
A 		66.4
(1.2)
A 		54
avr 69.1
(1.7) 		62.5
(0.6) 		77.4
(3) 		58.3
(-0.1) 		40
(-3) 		71.2
(2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 44.9
(3)
A 		14.2
(-3)
A 		15.9
(-2.7)
A 		15.6
(-2.7)
A 		31
B 37.2
(3)
A 		21.2
(0.3)
A 		1.4
(-3)
A 		22
(0.5)
A 		36
C 35.6
(3)
A 		15.2
(-2.7)
A 		16.3
(-2.4)
A 		14.1
(-3)
A 		22
avr 39.2
(3) 		16.9
(-1.8) 		11.2
(-3) 		17.2
(-1.7) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 15.6
(-0.3)
A 		20.6
(3)
A 		17.5
(1)
A 		12.2
(-2.5)
A 		11.4
(-3)
A 		19.4
(2.2)
A 		9
B 24
(2.3)
A 		15.6
(-3)
A 		17.4
(-1.9)
A 		16.4
(-2.5)
A 		21.8
(0.9)
A 		25.2
(3)
A 		10
C 19.9
(1)
A 		25.2
(3)
A 		20.4
(1.2)
A 		13
(-1.6)
A 		9.3
(-3)
A 		22.2
(1.9)
A 		16
avr 19.8
(1.2) 		20.5
(1.7) 		18.4
(0.2) 		13.9
(-3) 		14.2
(-2.8) 		22.3
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8482
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.25 NCBI
Target Description Y105C5B.25 /REP_DB=WormBase Gene ID /WP=CE24075 /TR=Q9NAL8 /GB=CAB54373.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070513 NCBI Caenorhabditis elegans Y105C5B.25 (Y105C5B.25) mRNA, complete cds. 11/11 None
SNAP00000018412 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16142505:16145324:-1 11/11 None
GENEFINDER00000018441 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16142505:16147539:-1 11/11 None
Y105C5B.25 ENSEMBL cdna:known chromosome:CEL140:IV:16142505:16147103:-1 gene:Y105C5B.25 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16142510-16147109(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.25
Entrez Gene 190901 Entrez gene
SwissProt Q9NAL8 EMBL-EBI
WormBase CE24075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 0.0
blast CAB54373 Hypothetical protein Y105C5B.25 [Caenorhabditis elegans] ref|NP_502914.1| Y105C5B.25 [Caenorhabditis elegans] 1.0E-171
blast CAB05267 Hypothetical protein R05A10.6 [Caenorhabditis elegans] ref|NP_502716.2| R05A10.6 [Caenorhabditis elegans] 1.0E-149
blast CAE62336 Hypothetical protein CBG06409 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-95
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502914.1 1 7-24
Y105C5B.25 1 7-24
GENEFINDER00000018441 1 51-73
Sequence
Target Sequence 
>C. ELEGANS:186666_AT
gcgcctaccattccaaatggaccgcattcatagatttggatgagagactatctacaaatg
gaccaggaacaatgattgatgtattacgatcaattcaagattcatctgttggagaagttc
agctacaaagtacaactatagttaaagatcaggattatcctgataaatatgagaatatag
agcaattagagcaagaattgatatttaaaaaatataatgaaacagttaaaaagacaatgt
caggcacaaaacctataattaaatccgaaaagataggattaatgtctattcatcaagcaa
gtgccaagtattttggagtcaaaacgttgttattaaatattactgtggcaagtgtgagac
atttacgaagtgtgaaacaccgaatctctggatcagactggaataagatgcctgatgaaa
ctggaaatcctatagaatttgtgacacgcccacttccagacgaattttctggaaaattga
gagaagcagttgtgaaacgagtattgcatgtatatgaaacaattccagttaattgtttaa
ctattccacagacattggtagacggtctacgacatccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCTACCATTCCAAATGGACCGC 207 287 791 Antisense
AATGGACCGCATTCATAGATTTGGA 8 163 806 Antisense
GGAGAAGTTCAGCTACAAAGTACAA 642 517 901 Antisense
GACAATGTCAGGCACAAAACCTATA 249 365 1023 Antisense
ATGTCTATTCATCAAGCAAGTGCCA 252 49 1072 Antisense
GTGGCAAGTGTGAGACATTTACGAA 541 489 1135 Antisense
GAAACACCGAATCTCTGGATCAGAC 184 357 1164 Antisense
ATAGAATTTGTGACACGCCCACTTC 81 23 1222 Antisense
CGCCCACTTCCAGACGAATTTTCTG 75 257 1237 Antisense
ATTGTTTAACTATTCCACAGACATT 427 5 1322 Antisense
GGTAGACGGTCTACGACATCCGAAC 706 491 1347 Antisense
Sequence Source Affymetrix Proprietary Database