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[186665_s_at] --- /// --- /// ---

Description K08D10.11 /REP_DB=WormBase Gene ID /WP=CE07363 /TR=Q21326 /GB=AAA98036.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3
(-2.7)
A 		1.9
(-2.9)
A 		1.4
(-3)
A 		34.9
(3)
A 		34
B 20.5
(3)
A 		7.6
(-1.4)
A 		6.8
(-1.7)
A 		3
(-3)
A 		18
C 2.6
(-3)
A 		16.4
(0.8)
A 		4.4
(-2.5)
A 		24.4
(3)
A 		22
avr 8.7
(-1.4) 		8.6
(-1.4) 		4.2
(-3) 		20.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		1.8
(-3)
A 		27.8
(3)
A 		4.6
(-2.4)
A 		2.6
(-2.8)
A 		15.8
(0.2)
A 		26
B 26
(3)
A 		3.3
(-2.8)
A 		23.9
(2.5)
A 		2.5
(-3)
A 		4.4
(-2.5)
A 		14.3
(0)
A 		24
C 1.7
(-2.9)
A 		44
(3)
A 		3
(-2.8)
A 		10.4
(-1.7)
A 		2.7
(-2.8)
A 		1.3
(-3)
A 		43
avr 10.3
(-0.2) 		16.4
(2.3) 		18.2
(3) 		5.8
(-2) 		3.2
(-3) 		10.5
(-0.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-2.1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		5.1
(3)
A 		5
B 6.5
(3)
A 		1.9
(-1.7)
A 		1.6
(-2)
A 		0.6
(-3)
A 		6
C 0.9
(-3)
A 		4.7
(3)
A 		1.5
(-2.1)
A 		4.1
(2.1)
A 		4
avr 2.8
(1.6) 		2.3
(0.1) 		1.2
(-3) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		6
(3)
A 		1.2
(-2.3)
A 		0.8
(-2.8)
A 		3.9
(0.7)
A 		5
B 9
(3)
A 		1.1
(-2.7)
A 		5.8
(0.7)
A 		0.7
(-3)
A 		1.8
(-2.2)
A 		5.3
(0.3)
A 		8
C 0.6
(-2.9)
A 		13.4
(3)
A 		0.8
(-2.8)
A 		2.1
(-2.2)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		13
avr 3.4
(0.5) 		5
(3) 		4.2
(1.7) 		1.3
(-2.8) 		1.2
(-3) 		3.2
(0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186665_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10915
Sequence Type Exemplar sequence
Representative Public ID K08D10.11 NCBI
Target Description K08D10.11 /REP_DB=WormBase Gene ID /WP=CE07363 /TR=Q21326 /GB=AAA98036.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068107(11), NM_067584(11), NM_074089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068107 NCBI Caenorhabditis elegans K08D10.11 (K08D10.11) mRNA, complete cds. 11/11 None
NM_067584 NCBI Caenorhabditis elegans F56B3.3 (F56B3.3) mRNA, complete cds. 11/11 A 
NM_074089 NCBI Caenorhabditis elegans F58D12.1 (F58D12.1) mRNA, complete cds. 11/11 None
F56B3.3 ENSEMBL cdna:known chromosome:CEL140:IV:770125:771431:-1 gene:F56B3.3 11/11 A 
K08D10.11 ENSEMBL cdna:known chromosome:CEL140:IV:4184941:4186116:-1 gene:K08D10.11 11/11 None
F58D12.1 ENSEMBL cdna:known chromosome:CEL140:V:14052238:14057724:1 gene:F58D12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009692 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041573 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009135 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14052237-14057717(+) 92.86 92.86
chrV:14041492-14046972(-) 92.64 92.64
chrIV:4184946-4186122(-) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl F56B3.3
K08D10.11
F58D12.1
Entrez Gene 186357 Entrez gene
186504 Entrez gene
187155 Entrez gene
SwissProt O45112 EMBL-EBI
O02276 EMBL-EBI
Q21326 EMBL-EBI
WormBase CE17884 Wormbase
CE11368 Wormbase
CE07363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29828 Hypothetical protein F56B3.3 [Caenorhabditis elegans] ref|NP_499985.1| F56B3.3 [Caenorhabditis elegans] 9.0E-91
blast AAA98036 Hypothetical protein K08D10.11 [Caenorhabditis elegans] ref|NP_500508.1| K08D10.11 [Caenorhabditis elegans] 4.0E-69
blast CAB03144 Hypothetical protein F58D12.1 [Caenorhabditis elegans] ref|NP_506490.1| F58D12.1 [Caenorhabditis elegans] 6.0E-65
blast AAA98036 Hypothetical protein K08D10.11 [Caenorhabditis elegans] ref|NP_500508.1| K08D10.11 [Caenorhabditis elegans] 2.0E-59
blast CAB03144 Hypothetical protein F58D12.1 [Caenorhabditis elegans] ref|NP_506490.1| F58D12.1 [Caenorhabditis elegans] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500508.1 1 73-95
NP_506490.1 1 71-93
K08D10.11 1 73-95
F58D12.1 1 71-93
Sequence
Target Sequence 
>C. ELEGANS:186665_S_AT
aagacttttctctaattatctcaatttccaattgtctctagtacaaccccctataacgtt
cccacgcttcgaaatgtttataaatggaaaaatttcagatcgtccaccacgtccgccatc
tttatcagcttcttcgtctccagctcctggatctgccagaaaaccctattttttctctat
ctttttccgaggagtggccctcatgatattttgtagtcttatctgtgatttttggaatca
tttttggttaaaaattttcttccaaaatttacaaattcagtgcgaaacgatcaattttcc
atacaaaaatattggaggcatgaaaaaactaaatttgaatgcgcgcgaaaaaagtgttca
atggagcgcgtttactcgtcgagcatttcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTTTTCTCTAATTATCTCAAT 629 153 51 Antisense
ATCTCAATTTCCAATTGTCTCTAGT 172 33 68 Antisense
TATAACGTTCCCACGCTTCGAAATG 147 655 102 Antisense
GTTCCCACGCTTCGAAATGTTTATA 2 443 108 Antisense
AGCTCCTGGATCTGCCAGAAAACCC 261 79 192 Antisense
GATCTGCCAGAAAACCCTATTTTTT 704 379 200 Antisense
ATTTTGTAGTCTTATCTGTGATTTT 104 15 258 Antisense
ACAAATTCAGTGCGAAACGATCAAT 344 111 321 Antisense
GAATGCGCGCGAAAAAAGTGTTCAA 47 331 387 Antisense
CAATGGAGCGCGTTTACTCGTCGAG 59 183 409 Antisense
GCGTTTACTCGTCGAGCATTTCGGG 294 291 418 Antisense
Sequence Source Affymetrix Proprietary Database