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[186664_at]

Description Y105C5A.15 /REP_DB=WormBase Gene ID /WP=CE24053 /TR=Q9U323 /GB=CAB60302.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 08      6grp_total > 26      4grp_total > 23      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 157.8
(3)
P 		55.3
(-3)
A 		67.5
(-2.3)
A 		151.5
(2.6)
P 		103
B 147.7
(3)
P 		70.4
(-2.5)
M 		62.8
(-3)
A 		91.7
(-1)
P 		85
C 151
(3)
P 		79.6
(-3)
P 		87.2
(-2.4)
P 		128.2
(1.1)
P 		71
avr 152.2
(3) 		68.4
(-3) 		72.5
(-2.7) 		123.8
(1) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 89
(1.7)
P 		104.5
(3)
P 		41.9
(-2.3)
P 		62.5
(-0.6)
A 		34.2
(-3)
A 		56.9
(-1.1)
M 		70
B 87.9
(3)
P 		68.2
(1.4)
P 		11.9
(-3)
A 		55.1
(0.4)
A 		16.7
(-2.6)
A 		44.6
(-0.4)
P 		76
C 124.9
(3)
P 		71.6
(-0.1)
P 		75
(0.1)
P 		22.4
(-3)
A 		50.8
(-1.3)
P 		29.8
(-2.6)
P 		103
avr 100.6
(3) 		81.4
(1.3) 		42.9
(-2.2) 		46.7
(-1.8) 		33.9
(-3) 		43.8
(-2.1) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 57.4
(3)
P 		12
(-3)
A 		17.6
(-2.3)
A 		22.2
(-1.7)
P 		45
B 47.1
(3)
P 		17.4
(-2.5)
M 		14.6
(-3)
A 		19.5
(-2.1)
P 		33
C 50
(3)
P 		22.9
(-2.7)
P 		30.4
(-1.1)
P 		21.6
(-3)
P 		28
avr 51.5
(3) 		17.4
(-3) 		20.9
(-2.4) 		21.1
(-2.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 16.4
(-1.4)
P 		37.1
(3)
P 		9.1
(-3)
P 		15.8
(-1.6)
A 		10.3
(-2.7)
A 		13.8
(-2)
M 		28
B 30.6
(3)
P 		22.7
(1.3)
P 		2.9
(-3)
A 		14.6
(-0.5)
A 		6.8
(-2.2)
A 		16.6
(-0)
P 		28
C 46.3
(3)
P 		21.9
(-0.5)
P 		19.1
(-0.9)
P 		4.5
(-3)
A 		16.4
(-1.3)
P 		10
(-2.2)
P 		42
avr 31.1
(3) 		27.2
(1.9) 		10.4
(-3) 		11.6
(-2.7) 		11.2
(-2.8) 		13.5
(-2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10048
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.15 NCBI
Target Description Y105C5A.15 /REP_DB=WormBase Gene ID /WP=CE24053 /TR=Q9U323 /GB=CAB60302.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070482 NCBI Caenorhabditis elegans Y105C5A.15 (Y105C5A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000033793 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15709242:15714569:1 11/11 None
Y105C5A.15 ENSEMBL cdna:known chromosome:CEL140:IV:15710938:15722229:1 gene:Y105C5A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15710943-15714575(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.15
Entrez Gene 178442 Entrez gene
SwissProt Q9U323 EMBL-EBI
WormBase CE35192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60302 Hypothetical protein Y105C5A.15 [Caenorhabditis elegans] ref|NP_502883.2| Y105C5A.15 [Caenorhabditis elegans] 0.0
blast T31575 hypothetical protein Y105C5A.r - Caenorhabditis elegans 0.0
blast CAE68072 Hypothetical protein CBG13701 [Caenorhabditis briggsae] 0.0
blast T31573 hypothetical protein Y105C5A.p - Caenorhabditis elegans 1.0E-113
blast CAB60302 Hypothetical protein Y105C5A.15 [Caenorhabditis elegans] ref|NP_502883.2| Y105C5A.15 [Caenorhabditis elegans] 7.0E-86
blast CAE68071 Hypothetical protein CBG13700 [Caenorhabditis briggsae] 4.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.4E-5
Sequence
Target Sequence 
>C. ELEGANS:186664_AT
atggacaatcgattgctcaccgtgccgtcgccgtcggatttccgcaaaagtcccgtcgat
aatcggtccttttcgtgcgaatcccccaaaagcagtggaaacgcagcgacttctgtggac
attctgagccagctcaatttcaatccagctctgctcacacagctctctgcagcaattgca
aggccaatgggaattgcatccccattactggacgatttgaaggtcaattttggatccgtg
ccaaaaattgagcaaatggattgctccggaggctcattcgacacagttggctcggggagc
ttcgacatgacaagtgctcattcttcgtttgatcatagcaccaacccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACAATCGATTGCTCACCGTGC 174 53 13 Antisense
TCGGATTTCCGCAAAAGTCCCGTCG 38 601 46 Antisense
GTCGATAATCGGTCCTTTTCGTGCG 667 471 67 Antisense
GAAACGCAGCGACTTCTGTGGACAT 201 359 110 Antisense
CTGTGGACATTCTGAGCCAGCTCAA 340 239 125 Antisense
TCAATTTCAATCCAGCTCTGCTCAC 320 633 146 Antisense
ATTGCATCCCCATTACTGGACGATT 401 5 205 Antisense
AAATGGATTGCTCCGGAGGCTCATT 71 121 266 Antisense
GAGGCTCATTCGACACAGTTGGCTC 29 407 281 Antisense
GACAAGTGCTCATTCTTCGTTTGAT 415 365 321 Antisense
TCGTTTGATCATAGCACCAACCCTA 380 603 337 Antisense
Sequence Source Affymetrix Proprietary Database