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[186662_at]

Description Y105C5B.17 /REP_DB=WormBase Gene ID /WP=CE24066 /TR=Q9NAM4 /GB=CAB54362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 32.3
(0)
A 		10.3
(-2.6)
A 		6.6
(-3)
A 		57.2
(3)
A 		51
B 5.6
(-3)
A 		37.4
(3)
A 		19.5
(-0.4)
A 		25.8
(0.8)
A 		32
C 24.6
(0.6)
A 		1.8
(-3)
A 		2.4
(-2.9)
A 		39.5
(3)
A 		38
avr 20.8
(-0.8) 		16.5
(-1.7) 		9.5
(-3) 		40.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 31.6
(0.8)
A 		2.2
(-3)
A 		21.6
(-0.5)
A 		15.2
(-1.3)
A 		44.3
(2.4)
A 		49
(3)
A 		47
B 4.3
(-2.7)
A 		1.1
(-3)
A 		33.3
(0.3)
A 		3.9
(-2.7)
A 		48.2
(1.8)
A 		60.1
(3)
P 		59
C 7.3
(-2.3)
A 		7.7
(-2.2)
A 		19.7
(-0.1)
A 		3.1
(-3)
A 		6.5
(-2.4)
A 		37.5
(3)
A 		34
avr 14.4
(-1.6) 		3.7
(-3) 		24.9
(-0.2) 		7.4
(-2.5) 		33
(0.9) 		48.9
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.8
(3)
A 		2.2
(-2.7)
A 		1.7
(-3)
A 		8.4
(1)
A 		10
B 1.8
(-3)
A 		9.2
(3)
A 		4.5
(-0.8)
A 		5.5
(0)
A 		7
C 8.1
(3)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		6.7
(1.9)
A 		8
avr 7.2
(3) 		4
(-0.9) 		2.3
(-3) 		6.9
(2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.8
(-0.6)
A 		0.8
(-3)
A 		4.7
(-1.1)
A 		3.9
(-1.5)
A 		13.4
(3)
A 		11.9
(2.3)
A 		13
B 1.5
(-2.7)
A 		0.4
(-3)
A 		8.1
(-0.9)
A 		1
(-2.8)
A 		19.6
(2.2)
A 		22.4
(3)
P 		22
C 2.7
(-1.9)
A 		2.4
(-2.1)
A 		5
(-0.8)
A 		0.6
(-3)
A 		2.1
(-2.2)
A 		12.5
(3)
A 		12
avr 3.3
(-2.1) 		1.2
(-3) 		5.9
(-1) 		1.8
(-2.8) 		11.7
(1.4) 		15.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8950
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.17 NCBI
Target Description Y105C5B.17 /REP_DB=WormBase Gene ID /WP=CE24066 /TR=Q9NAM4 /GB=CAB54362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070505 NCBI Caenorhabditis elegans Y105C5B.17 (Y105C5B.17) mRNA, complete cds. 11/11 None
SNAP00000018401 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15963269:15964387:1 10/11 None
GENEFINDER00000018432 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15962942:15964387:1 10/11 None
Y105C5B.17 ENSEMBL cdna:known chromosome:CEL140:IV:15963212:15964387:1 gene:Y105C5B.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15963217-15964393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.17
Entrez Gene 190896 Entrez gene
SwissProt Q9NAM4 EMBL-EBI
WormBase CE24066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54362 Hypothetical protein Y105C5B.17 [Caenorhabditis elegans] ref|NP_502906.1| Y105C5B.17 [Caenorhabditis elegans] 1.0E-113
blast CAB54362 Hypothetical protein Y105C5B.17 [Caenorhabditis elegans] ref|NP_502906.1| Y105C5B.17 [Caenorhabditis elegans] 1.0E-103
blast CAB54362 Hypothetical protein Y105C5B.17 [Caenorhabditis elegans] ref|NP_502906.1| Y105C5B.17 [Caenorhabditis elegans] 1.0E-96
blast CAB54363 Hypothetical protein Y105C5B.18 [Caenorhabditis elegans] ref|NP_502907.3| Y105C5B.18 [Caenorhabditis elegans] 6.0E-18
blast CAB54363 Hypothetical protein Y105C5B.18 [Caenorhabditis elegans] ref|NP_502907.3| Y105C5B.18 [Caenorhabditis elegans] 8.0E-18
blast CAB54363 Hypothetical protein Y105C5B.18 [Caenorhabditis elegans] ref|NP_502907.3| Y105C5B.18 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502906.1 1 180-199
Y105C5B.17 1 180-199
SNAP00000018401 1 161-180
GENEFINDER00000018432 1 212-231
Sequence
Target Sequence 
>C. ELEGANS:186662_AT
cgagctagcgcagtactaaacacccgaaaaatgtcggttgctgagaaattgcaagtgagc
ttgtctgatgcaaagaaactagctacttcaacaaaagagcaaactatcatgatcaacatc
atcaacaccatccgccaaaaagaagcgatggaacgcaaaatttcaaatatgcacgagctc
gtatttgatgaagagctcgcaaagaaagagttccaggaatgctcatgggacaaggatcat
tttatcaatgtgaaggatgcaaataatttcgccgcaatttggagctacaaccattcgggc
cccttccttcagatgaacttccggtactttatcaatccggtgcagacgaaaattgggtgc
agcaacgtgcagtgcaaaggcaaaaattttaaaactttcgcctgcattatgggaccagaa
tttaaccaattggattttgaagtgagaaagggtgaacctggggagcactgtccggctgga
agaactgagatgaaaatgtgcacgtctgaggctgcaacttttactggatacgctctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCTAGCGCAGTACTAAACACCC 654 249 40 Antisense
TGATCAACATCATCAACACCATCCG 292 565 149 Antisense
GAGTTCCAGGAATGCTCATGGGACA 525 397 247 Antisense
TAATTTCGCCGCAATTTGGAGCTAC 675 631 303 Antisense
TTTGGAGCTACAACCATTCGGGCCC 15 667 317 Antisense
GGTACTTTATCAATCCGGTGCAGAC 646 503 362 Antisense
TTGGGTGCAGCAACGTGCAGTGCAA 411 705 392 Antisense
AACTTTCGCCTGCATTATGGGACCA 641 139 432 Antisense
AAGGGTGAACCTGGGGAGCACTGTC 495 159 487 Antisense
GTGCACGTCTGAGGCTGCAACTTTT 431 481 537 Antisense
GCAACTTTTACTGGATACGCTCTGA 699 319 553 Antisense
Sequence Source Affymetrix Proprietary Database