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[186660_s_at]

Description F46C5.1 /REP_DB=WormBase Gene ID /WP=CE03343 /TR=SW:P52880 /GB=CAA91048.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      6grp_highest_nonorm > 53      6grp_total > 72      4grp_total > 47      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2006
1 2 3 4 range
A 2031.6
(3)
P 		253.8
(-2.4)
P 		251.3
(-2.4)
P 		53.6
(-3)
A 		1978
B 2027.7
(3)
P 		310.5
(-2.1)
P 		322
(-2.1)
P 		25.8
(-3)
A 		2002
C 2025.4
(3)
P 		401
(-2)
P 		359.1
(-2.2)
P 		87.2
(-3)
A 		1938
avr 2028.2
(3) 		321.8
(-2.2) 		310.8
(-2.2) 		55.5
(-3) 		1973

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1241
1 2 3 4 5 6 range
A 296.7
(-2.5)
P 		492.6
(-1.5)
P 		1366.4
(3)
P 		1209.8
(2.2)
P 		967.8
(1)
P 		189.1
(-3)
P 		1177
B 298.1
(-2.4)
P 		454.1
(-1.6)
P 		1405.2
(3)
P 		1341.7
(2.7)
P 		972
(0.9)
P 		164.4
(-3)
P 		1241
C 277.9
(-2.5)
P 		412
(-1.8)
P 		1332.2
(3)
P 		1180.8
(2.2)
P 		947.5
(1)
P 		187.9
(-3)
P 		1144
avr 290.9
(-2.4) 		452.9
(-1.6) 		1367.9
(3) 		1244.1
(2.4) 		962.4
(1) 		180.5
(-3) 		1187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 739.7
(3)
P 		55.1
(-2.6)
P 		65.7
(-2.5)
P 		7.8
(-3)
A 		732
B 646.6
(3)
P 		76.7
(-2.3)
P 		74.6
(-2.4)
P 		5.5
(-3)
A 		641
C 670.5
(3)
P 		115.3
(-2.1)
P 		125.2
(-2)
P 		14.7
(-3)
A 		656
avr 685.6
(3) 		82.4
(-2.4) 		88.5
(-2.3) 		9.3
(-3) 		676

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 54.7
(-2.8)
P 		175.2
(-0)
P 		297.6
(2.8)
P 		306.8
(3)
P 		292
(2.7)
P 		46
(-3)
P 		261
B 103.7
(-2.2)
P 		151.2
(-1.4)
P 		341.2
(2)
P 		355.4
(2.3)
P 		394.9
(3)
P 		61.3
(-3)
P 		334
C 103
(-2.1)
P 		125.7
(-1.6)
P 		339.1
(3)
P 		237.5
(0.8)
P 		306.6
(2.3)
P 		62.9
(-3)
P 		276
avr 87.1
(-2.3) 		150.7
(-0.9) 		326
(2.9) 		299.9
(2.3) 		331.2
(3) 		56.7
(-3) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186660_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2704
Sequence Type Exemplar sequence
Representative Public ID F46C5.1 NCBI
Target Description F46C5.1 /REP_DB=WormBase Gene ID /WP=CE03343 /TR=SW:P52880 /GB=CAA91048.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063478 NCBI Caenorhabditis elegans F46C5.1 (F46C5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000022666 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8820417:8821082:-1 11/11 None
F46C5.1 ENSEMBL cdna:known chromosome:CEL140:II:8819696:8821116:-1 gene:F46C5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022654 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8820413-8821079(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C5.1
Entrez Gene 174411 Entrez gene
SwissProt P52880 EMBL-EBI
WormBase CE03343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91048 Hypothetical protein F46C5.1 [Caenorhabditis elegans] ref|NP_495879.1| F46C5.1 [Caenorhabditis elegans] sp|P52880|YAF1_CAEEL Hypothetical protein F46C5.1 in chromosome II 3.0E-62
blast CAE59744 Hypothetical protein CBG03187 [Caenorhabditis briggsae] 8.0E-55
blast CAE59743 Hypothetical protein CBG03186 [Caenorhabditis briggsae] 1.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495879.1 1 4-26
F46C5.1 1 4-26
GENEFINDER00000022666 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:186660_S_AT
cactgcttccattcttttggttgtcatcgttgccttctgtgccgctgccccaatgattga
ggagccaaaacttgaaaagccaaccaatctcgaaattttgttcgctaaaattgtgaaaaa
gcagaatgagtccaagcaacaccgtctcatcaactttatcagccgtgccatgccaggagg
tgtcgatgctccaattgcatcaatggctgaatacgagactttcaaatctgacaaatctgc
caatttcttgagcgacggagccggacacgtagttttccgccaatacagacgtgctcgtct
ttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGCTTCCATTCTTTTGGTTGTC 53 199 33 Antisense
TCTTTTGGTTGTCATCGTTGCCTTC 202 615 45 Antisense
GCCGCTGCCCCAATGATTGAGGAGC 650 285 73 Antisense
GAAAAGCCAACCAATCTCGAAATTT 313 355 106 Antisense
GAATGAGTCCAAGCAACACCGTCTC 214 331 156 Antisense
ACACCGTCTCATCAACTTTATCAGC 533 109 171 Antisense
GCCATGCCAGGAGGTGTCGATGCTC 473 281 199 Antisense
AATCTGCCAATTTCTTGAGCGACGG 411 169 266 Antisense
AGCGACGGAGCCGGACACGTAGTTT 306 1 283 Antisense
CACGTAGTTTTCCGCCAATACAGAC 568 199 298 Antisense
AATACAGACGTGCTCGTCTTTCTGA 339 171 314 Antisense
Sequence Source Affymetrix Proprietary Database