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[186656_at]

Description Y38E10A.10 /REP_DB=WormBase Gene ID /WP=CE21590 /TR=Q9NAK1 /GB=CAB54401.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 85.8
(1.9)
A 		16.2
(-3)
A 		20.5
(-2.7)
A 		100.6
(3)
A 		84
B 62.7
(0.3)
A 		45.6
(-0.7)
A 		7.6
(-3)
A 		107.2
(3)
A 		100
C 98.9
(1.3)
A 		49.3
(-1.9)
A 		31.3
(-3)
A 		125.7
(3)
P 		94
avr 82.5
(1.1) 		37
(-1.9) 		19.8
(-3) 		111.2
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 24.1
(-1.6)
A 		9.4
(-2.7)
A 		4.6
(-3)
A 		20.7
(-1.9)
A 		15.3
(-2.3)
A 		90.9
(3)
A 		86
B 4.8
(-3)
A 		17.1
(-1.5)
A 		11.6
(-2.2)
A 		10.5
(-2.3)
A 		28
(-0.2)
A 		53.7
(3)
A 		49
C 25.1
(-0.2)
A 		9.5
(-3)
A 		12.3
(-2.5)
A 		39.7
(2.4)
A 		43.2
(3)
A 		38
(2.1)
A 		34
avr 18
(-2) 		12
(-2.7) 		9.5
(-3) 		23.6
(-1.4) 		28.8
(-0.7) 		60.9
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 31.3
(3)
A 		3.5
(-3)
A 		5.4
(-2.6)
A 		14.7
(-0.6)
A 		28
B 20
(2.2)
A 		11.3
(-0.3)
A 		1.8
(-3)
A 		22.8
(3)
A 		21
C 32.7
(3)
A 		14.2
(-2.1)
A 		10.9
(-3)
A 		21.2
(-0.2)
P 		22
avr 28
(3) 		9.7
(-2) 		6
(-3) 		19.6
(0.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.4
(-2)
A 		3.4
(-2.3)
A 		1
(-3)
A 		5.3
(-1.8)
A 		4.6
(-2)
A 		22.1
(3)
A 		21
B 1.7
(-3)
A 		5.7
(-1.7)
A 		2.8
(-2.6)
A 		2.8
(-2.6)
A 		11.4
(0.2)
A 		20
(3)
A 		18
C 9.3
(0.5)
A 		2.9
(-3)
A 		3.1
(-2.9)
A 		8
(-0.2)
A 		14
(3)
A 		12.7
(2.3)
A 		11
avr 5.1
(-2) 		4
(-2.4) 		2.3
(-3) 		5.4
(-1.8) 		10
(-0.1) 		18.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3538
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.10 NCBI
Target Description Y38E10A.10 /REP_DB=WormBase Gene ID /WP=CE21590 /TR=Q9NAK1 /GB=CAB54401.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064292 NCBI Caenorhabditis elegans Y38E10A.10 (Y38E10A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000017460 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12610282:12612004:-1 11/11 None
Y38E10A.10 ENSEMBL cdna:known chromosome:CEL140:II:12610282:12612004:-1 gene:Y38E10A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017433 4/11 Cross Hyb Matching Probes None
SNAP00000017434 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12610278-12612001(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.10
Entrez Gene 189657 Entrez gene
SwissProt Q9NAK1 EMBL-EBI
WormBase CE21590 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54401 Hypothetical protein Y38E10A.10 [Caenorhabditis elegans] ref|NP_496693.1| Y38E10A.10 [Caenorhabditis elegans] 1.0E-105
blast CAE67499 Hypothetical protein CBG13009 [Caenorhabditis briggsae] 4.0E-39
blast T16705 hypothetical protein R07G3.2 - Caenorhabditis elegans 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 2.4E-12
Pfam IPR002918 EMBL-EBI Lipase, class 2 8.0E-35
Sequence
Target Sequence 
>C. ELEGANS:186656_AT
tatgggcctgagatgctagctgcattggctagaactgatatcggagacattggaagctat
ggaggaggaagtcatgttggaaatagtgcaactagcaaacgcccgatcatcctagtccat
ggagcaaccaacaccgctgcatccttcgcccttcagagagattacttcatgagccatggc
tggagcgctgaaaccgtctatggcacaacttatggtgatggtggaacttgtgtggatgat
tatgacgtagatcttggagacagcttgactagtattgtggagacttatgtttctgttgct
ggagccaatagaggctcaggattttgtgtcgctcctaccttcaccagctttcttgcacca
acctgcaaccgtgtcaacggactatggtgtgcttcaagattcataaaagatatcaacgag
gaaactcactacgagggctccaaggttttctcgatctacggacgaaatgacgacaaggtg
atgttcagcaacctctgttggtctcgcagctctcgaatcaacggagccgatggagaaatg
gataacgctccgggaaaccatgaccagattctatctggcaccgttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGGCCTGAGATGCTAGCTGCAT 586 655 103 Antisense
CCCGATCATCCTAGTCCATGGAGCA 390 261 204 Antisense
ATCCTTCGCCCTTCAGAGAGATTAC 622 39 243 Antisense
TGGAGCGCTGAAACCGTCTATGGCA 229 549 283 Antisense
GACTTATGTTTCTGTTGCTGGAGCC 566 371 384 Antisense
ACCAACCTGCAACCGTGTCAACGGA 437 83 459 Antisense
GTCAACGGACTATGGTGTGCTTCAA 21 465 475 Antisense
GAGGAAACTCACTACGAGGGCTCCA 670 403 520 Antisense
GATGTTCAGCAACCTCTGTTGGTCT 31 411 582 Antisense
TAACGCTCCGGGAAACCATGACCAG 665 637 645 Antisense
CAGATTCTATCTGGCACCGTTGAGA 277 207 667 Antisense
Sequence Source Affymetrix Proprietary Database