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[186654_at]

Description F35F10.10 /REP_DB=WormBase Gene ID /WP=CE09935 /TR=Q9GYT7 /GB=AAF99935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 24.3
(-1.2)
A 		43.6
(0.5)
A 		3.3
(-3)
A 		72.3
(3)
A 		69
B 17.8
(-1.2)
A 		3.5
(-3)
A 		15.6
(-1.5)
A 		51.2
(3)
A 		48
C 21.1
(-1.1)
A 		4
(-2.9)
A 		3.2
(-3)
A 		58.3
(3)
A 		55
avr 21.1
(-1.5) 		17
(-1.9) 		7.4
(-3) 		60.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 31.1
(0.4)
A 		14.6
(-2.5)
A 		11.8
(-3)
A 		21.1
(-1.4)
A 		45.9
(3)
A 		20.2
(-1.5)
A 		34
B 9.6
(-1.6)
A 		4
(-2.7)
A 		2.4
(-3)
A 		14.9
(-0.6)
A 		34
(3)
A 		7
(-2.1)
A 		32
C 1
(-3)
A 		35.7
(3)
A 		15
(-0.6)
A 		25
(1.1)
A 		22.7
(0.8)
A 		15.7
(-0.5)
A 		35
avr 13.9
(-2) 		18.1
(-0.9) 		9.7
(-3) 		20.3
(-0.4) 		34.2
(3) 		14.3
(-1.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.9
(1.9)
A 		9.5
(2.3)
A 		0.9
(-3)
A 		10.6
(3)
A 		10
B 5.7
(-0.1)
A 		0.9
(-3)
A 		3.6
(-1.4)
A 		10.9
(3)
A 		10
C 7
(1.1)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		9.8
(3)
A 		9
avr 7.2
(0.7) 		3.9
(-1.6) 		1.9
(-3) 		10.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.7
(-1.4)
A 		5.2
(-1.6)
A 		2.6
(-3)
A 		5.3
(-1.6)
A 		13.9
(3)
A 		4.9
(-1.8)
A 		11
B 3.3
(-1.8)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		3.9
(-1.5)
A 		13.8
(3)
A 		2.6
(-2.1)
A 		13
C 0.4
(-3)
A 		10.9
(3)
A 		3.8
(-1.1)
A 		5
(-0.4)
A 		7.3
(0.9)
A 		5.3
(-0.2)
A 		11
avr 3.1
(-2.5) 		5.8
(-0.8) 		2.3
(-3) 		4.7
(-1.5) 		11.7
(3) 		4.3
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15694
Sequence Type Exemplar sequence
Representative Public ID F35F10.10 NCBI
Target Description F35F10.10 /REP_DB=WormBase Gene ID /WP=CE09935 /TR=Q9GYT7 /GB=AAF99935.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071513 NCBI Caenorhabditis elegans F35F10.10 (F35F10.10) mRNA, complete cds. 11/11 None
SNAP00000011246 ENSEMBL cdna:SNAP chromosome:CEL140:V:3302241:3307189:-1 11/11 None
GENEFINDER00000011260 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3302209:3307189:-1 11/11 None
F35F10.10 ENSEMBL cdna:known chromosome:CEL140:V:3302241:3307189:-1 gene:F35F10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3302240-3307189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.10
Entrez Gene 185315 Entrez gene
SwissProt Q9GYT7 EMBL-EBI
WormBase CE09935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99935 Hypothetical protein F35F10.10 [Caenorhabditis elegans] ref|NP_503914.1| F35F10.10 [Caenorhabditis elegans] 0.0
blast AAC27095 Hypothetical protein C04E12.10 [Caenorhabditis elegans] ref|NP_503941.1| C04E12.10 [Caenorhabditis elegans] 0.0
blast AAC04399 Hypothetical protein C17B7.5 [Caenorhabditis elegans] ref|NP_503925.1| C17B7.5 [Caenorhabditis elegans] 0.0
blast AAC04399 Hypothetical protein C17B7.5 [Caenorhabditis elegans] ref|NP_503925.1| C17B7.5 [Caenorhabditis elegans] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 8.8E-7
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.0E-40
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.9E-43
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 8.8E-7
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.8E-34
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.2E-30
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 8.8E-7
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.0E-40
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.9E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503914.1 1 34-56
F35F10.10 1 34-56
SNAP00000011246 1 27-49
GENEFINDER00000011260 1 38-60
Sequence
Target Sequence 
>C. ELEGANS:186654_AT
gtctcaacgcaattactaacatggcggcaacagcatatcgctttgggaccaatatccaga
gaaaatcatgtgaaattcacctacgatgtcatgagggacatgtattcgcacactaagccg
aatggatcttcatatgttccgtacaatgttgaaaatattgaacgagtagtggataaacga
ttgaatcaagtttatttacataggaacgatttaacaaaatatacttatataagttgggta
ttcgatatgacgatcgatgggaaagtagtagtcaaattgacaattaaagtaagcggaatg
gaaaaacgtgccagtagagggaaattagaaatttgtcgaatttatggatacgagaagtgc
acagcgattcctattgacgaaggatttacgattgagtatcctcaattctctgttttcaag
attgaatactactacaacgcgctcagcgatccgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCAACGCAATTACTAACATGGC 226 469 1513 Antisense
GCAATTACTAACATGGCGGCAACAG 645 321 1521 Antisense
TGGCGGCAACAGCATATCGCTTTGG 619 543 1534 Antisense
GCTTTGGGACCAATATCCAGAGAAA 625 303 1552 Antisense
GGGACATGTATTCGCACACTAAGCC 125 495 1607 Antisense
CGCACACTAAGCCGAATGGATCTTC 102 255 1619 Antisense
GATCTTCATATGTTCCGTACAATGT 569 419 1637 Antisense
AGTGCACAGCGATTCCTATTGACGA 710 59 1868 Antisense
ATTGACGAAGGATTTACGATTGAGT 541 1 1885 Antisense
TGAATACTACTACAACGCGCTCAGC 342 573 1935 Antisense
TACAACGCGCTCAGCGATCCGAAAA 531 639 1945 Antisense
Sequence Source Affymetrix Proprietary Database