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[186651_at]

Description Y119C1A.1 /REP_DB=WormBase Gene ID /WP=CE24171 /TR=Q9N582 /GB=AAF60432.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 03      6grp_total > 45      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 128.2
(-0.7)
P 		85.2
(-2.9)
P 		83.9
(-3)
A 		200.8
(3)
P 		117
B 144.8
(3)
P 		74.7
(-3)
A 		83.7
(-2.2)
A 		140.3
(2.6)
P 		70
C 125.9
(-1.7)
P 		126.4
(-1.7)
A 		106.3
(-3)
P 		200.1
(3)
P 		94
avr 133
(-0.2) 		95.4
(-2.7) 		91.3
(-3) 		180.4
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 52.4
(-1.2)
A 		102.8
(3)
P 		87.1
(1.7)
M 		30.6
(-3)
A 		46.8
(-1.7)
A 		89.4
(1.9)
P 		72
B 85.1
(0.7)
M 		64.6
(-1.7)
P 		67.8
(-1.3)
P 		105
(3)
P 		53.1
(-3)
A 		90.4
(1.3)
P 		52
C 67.9
(-0.5)
A 		97.4
(2.2)
A 		105.4
(3)
P 		83.9
(1)
P 		41.7
(-3)
A 		76.1
(0.2)
P 		64
avr 68.5
(0.1) 		88.3
(3) 		86.8
(2.8) 		73.2
(0.8) 		47.2
(-3) 		85.3
(2.6) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 46.7
(3)
P 		18.5
(-3)
P 		21.9
(-2.3)
A 		29.4
(-0.7)
P 		28
B 46.2
(3)
P 		18.4
(-3)
A 		19.4
(-2.8)
A 		29.9
(-0.5)
P 		28
C 41.7
(3)
P 		36.3
(-1.1)
A 		37.1
(-0.5)
P 		33.7
(-3)
P 		8
avr 44.9
(3) 		24.4
(-3) 		26.1
(-2.5) 		31
(-1.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.7
(-2.6)
A 		36.6
(3)
P 		19
(-0.7)
M 		7.8
(-3)
A 		14.1
(-1.7)
A 		21.8
(-0.1)
P 		29
B 29.6
(1.6)
M 		21.5
(-1.3)
P 		16.5
(-3)
P 		27.8
(0.9)
P 		21.6
(-1.2)
A 		33.7
(3)
P 		17
C 25.2
(1.3)
A 		29.7
(3)
A 		26.8
(1.9)
P 		16.9
(-1.7)
P 		13.5
(-3)
A 		25.5
(1.4)
P 		16
avr 21.5
(-0.6) 		29.3
(3) 		20.8
(-1) 		17.5
(-2.5) 		16.4
(-3) 		27
(1.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1494
Sequence Type Exemplar sequence
Representative Public ID Y119C1A.1 NCBI
Target Description Y119C1A.1 /REP_DB=WormBase Gene ID /WP=CE24171 /TR=Q9N582 /GB=AAF60432.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059013 NCBI Caenorhabditis elegans Y119C1A.1 (Y119C1A.1) mRNA, complete cds. 11/11 None
Y119C1A.1 ENSEMBL cdna:known chromosome:CEL140:I:4641408:4643133:-1 gene:Y119C1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4641391-4643133(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1A.1
Entrez Gene 191026 Entrez gene
SwissProt Q9N582 EMBL-EBI
WormBase CE34395 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60432 Hypothetical protein Y119C1A.1 [Caenorhabditis elegans] ref|NP_491414.2| Y119C1A.1 [Caenorhabditis elegans] 1.0E-115
blast CAE74486 Hypothetical protein CBG22237 [Caenorhabditis briggsae] 1.0E-47
Sequence
Target Sequence 
>C. ELEGANS:186651_AT
cagcagcaaataccaaatccaccatatggttgggctctaaatgcagcagctctacctccg
tatccatcatctactgcctcatcatcttcagcttcacaaactccatcatttgctcctcta
agccttgatactggatctggaaatgagacggctggtagtggattcgatcatttagccgtt
catcacgatgataatcacgatgaaagagactatttgataccagatcaacatgaaattatt
gagctccggaaagctcaatcggctaaactggagcaaggaaaacaacgggtaatcaacgag
gtgacatcactaaatctaatcacaaatgacgtcactgagctcaaaaaatggtttgatgca
aaatatccacatacactggttaacgatgccgcgacgaatgaagaagaattggagagaact
gttcgaaaattggaagaaaaattaaaaaggttgagagcaaaaagtgcaaaaggagttcca
cctccaaagagaataactccaattcgtatcgctgtcatcattgtcagctccccagtcgtc
gatttgatccatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAGCAAATACCAAATCCACCAT 105 205 106 Antisense
AATCCACCATATGGTTGGGCTCTAA 580 167 121 Antisense
CTCTAAATGCAGCAGCTCTACCTCC 160 229 140 Antisense
ATTTGCTCCTCTAAGCCTTGATACT 421 17 213 Antisense
GACGGCTGGTAGTGGATTCGATCAT 111 377 252 Antisense
TCGATCATTTAGCCGTTCATCACGA 539 603 269 Antisense
AGCTCCGGAAAGCTCAATCGGCTAA 379 81 347 Antisense
TACACTGGTTAACGATGCCGCGACG 388 639 477 Antisense
AACTCCAATTCGTATCGCTGTCATC 194 141 600 Antisense
ATCGCTGTCATCATTGTCAGCTCCC 541 37 613 Antisense
CCCAGTCGTCGATTTGATCCATCGG 297 259 636 Antisense
Sequence Source Affymetrix Proprietary Database