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[186650_at]

Description Y55F3BL.3 /REP_DB=WormBase Gene ID /WP=CE25497 /TR=Q9N353 /GB=AAF60810.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 18      6grp_total > 47      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 224.9
(3)
P 		137.9
(-2.7)
P 		132.9
(-3)
A 		210
(2)
P 		92
B 167.9
(3)
P 		142.4
(0.1)
P 		115.2
(-3)
M 		131.5
(-1.1)
P 		53
C 165.5
(1.1)
P 		146.5
(-0.9)
P 		127
(-3)
P 		183.2
(3)
P 		56
avr 186.1
(3) 		142.3
(-1.3) 		125
(-3) 		174.9
(1.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 122.4
(1.2)
M 		90.6
(-3)
A 		113.5
(0.1)
A 		92.4
(-2.8)
A 		96.8
(-2.2)
A 		135.6
(3)
P 		45
B 123.9
(2.8)
M 		119.7
(2.5)
A 		41.4
(-3)
A 		125.3
(2.9)
A 		75.7
(-0.6)
A 		126.9
(3)
P 		86
C 136.2
(2.5)
A 		103.8
(-0.2)
A 		142.2
(3)
M 		107.7
(0.1)
A 		71.3
(-3)
A 		115.8
(0.8)
P 		71
avr 127.5
(3) 		104.7
(0) 		99
(-0.7) 		108.5
(0.5) 		81.3
(-3) 		126.1
(2.8) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 81.9
(3)
P 		29.9
(-3)
P 		34.8
(-2.4)
A 		30.7
(-2.9)
P 		52
B 53.5
(3)
P 		35.2
(-1.1)
P 		26.7
(-3)
M 		28
(-2.7)
P 		27
C 54.8
(3)
P 		42.1
(-0.2)
P 		44.3
(0.4)
P 		30.9
(-3)
P 		24
avr 63.4
(3) 		35.7
(-2) 		35.3
(-2) 		29.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 22.6
(-3)
M 		32.2
(2.5)
A 		24.7
(-1.8)
A 		23.4
(-2.5)
A 		29.2
(0.8)
A 		33
(3)
P 		10
B 43.1
(2.3)
M 		39.8
(1.8)
A 		10.1
(-3)
A 		33.2
(0.7)
A 		30.7
(0.3)
A 		47.3
(3)
P 		37
C 50.5
(3)
A 		31.7
(-0.9)
A 		36.2
(0)
M 		21.7
(-3)
A 		23.1
(-2.7)
A 		38.8
(0.6)
P 		29
avr 38.7
(2.6) 		34.6
(1.1) 		23.7
(-3) 		26.1
(-2.1) 		27.7
(-1.5) 		39.7
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11132
Sequence Type Exemplar sequence
Representative Public ID Y55F3BL.3 NCBI
Target Description Y55F3BL.3 /REP_DB=WormBase Gene ID /WP=CE25497 /TR=Q9N353 /GB=AAF60810.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067594(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067594 NCBI Caenorhabditis elegans Y55F3BL.2 (Y55F3BL.2) mRNA, complete cds. 10/11 None
GENEFINDER00000006749 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:821066:824093:-1 10/11 None
Y55F3BL.2 ENSEMBL cdna:known chromosome:CEL140:IV:807439:824204:-1 gene:Y55F3BL.2 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006747 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:821134-824210(-) 98.95 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3BL.2
Entrez Gene 190312 Entrez gene
SwissProt Q65XW9 EMBL-EBI
WormBase CE37575 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597599_AT similar to solute carrier family 39 (zinc transporter), member 8 cfa
CANINE_2:CFA.12906.1.A1_AT similar to solute carrier family 39 (zinc transporter), member 8 cfa
CANINE_2:CFA.12906.1.A1_S_AT similar to solute carrier family 39 (zinc transporter), member 8 cfa
CANINE_2:CFA.12906.1.A1_X_AT similar to solute carrier family 39 (zinc transporter), member 8 cfa
CANINE_2:CFAAFFX.16711.1.S1_AT similar to solute carrier family 39 (zinc transporter), member 8 cfa
CHICKEN:GGAAFFX.7796.1.S1_AT similar to solute carrier family 39 (zinc transporter), member 8; up-regulated by BCG-CWS; solute carrier family 39 (metal ion transporter), member 8 gga
CHICKEN:GGAAFFX.7796.1.S1_S_AT similar to solute carrier family 39 (zinc transporter), member 8; up-regulated by BCG-CWS; solute carrier family 39 (metal ion transporter), member 8 gga
HG-U133_PLUS_2:219869_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A:219869_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A_2:219869_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133_PLUS_2:209267_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A:209267_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-FOCUS:209267_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A_2:209267_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HU35KSUBA:RC_AA233763_AT solute carrier family 39 (zinc transporter), member 8 hs
U133_X3P:G12657580_3P_A_AT solute carrier family 39 (zinc transporter), member 8 hs
U133_X3P:G11545899_3P_A_AT solute carrier family 39 (zinc transporter), member 8 hs
U133_X3P:HS.284205.1.A1_3P_A_AT solute carrier family 39 (zinc transporter), member 8 hs
U133_X3P:HS.284205.0.S1_3P_A_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A_2:209266_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133_PLUS_2:209266_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A:209266_S_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133_PLUS_2:222935_X_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133B:222935_X_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U95AV2:40456_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U95E:78153_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U95E:90587_AT solute carrier family 39 (zinc transporter), member 8 hs
HG-U133_PLUS_2:216504_S_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A_2:216504_S_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U133A:216504_S_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U133_PLUS_2:228945_S_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U133B:228945_S_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U95B:45180_AT Solute carrier family 39 (zinc transporter), member 8 hs
HG-U95B:45554_AT Solute carrier family 39 (zinc transporter), member 8 hs
HU35KSUBC:RC_H87489_AT Solute carrier family 39 (zinc transporter), member 8 hs
HU35KSUBA:H87488_AT Solute carrier family 39 (zinc transporter), member 8 hs
U133_X3P:HS.284205.2.A1_3P_AT Solute carrier family 39 (zinc transporter), member 8 hs
MG-U74AV2:97442_AT solute carrier family 39 (metal ion transporter), member 8 mm
MG-U74BV2:112237_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOE430A:1416832_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOUSE430A_2:1416832_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOUSE430_2:1416832_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOE430A:1448482_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOUSE430A_2:1448482_AT solute carrier family 39 (metal ion transporter), member 8 mm
MOUSE430_2:1448482_AT solute carrier family 39 (metal ion transporter), member 8 mm
MU19KSUBC:TC42052_AT Solute carrier family 39 (metal ion transporter), member 8, mRNA (cDNA clone MGC:7011 IMAGE:3155670) mm
RAE230A:1376709_AT solute carrier family 39 (metal ion transporter), member 8 (predicted) rn
RAT230_2:1376709_AT solute carrier family 39 (metal ion transporter), member 8 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAU87812 Hypothetical protein Y55F3BL.2 [Caenorhabditis elegans] ref|NP_499995.2| Y55F3BL.2 [Caenorhabditis elegans] 0.0
blast CAE68299 Hypothetical protein CBG13990 [Caenorhabditis briggsae] 3.0E-72
blast BAD02485.1 hypothetical protein [Homo sapiens] 4.0E-54
blast AAU87812 Hypothetical protein Y55F3BL.2 [Caenorhabditis elegans] ref|NP_499995.2| Y55F3BL.2 [Caenorhabditis elegans] 1.0E-40
blast CAE68300 Hypothetical protein CBG13991 [Caenorhabditis briggsae] 4.0E-35
blast T27463 hypothetical protein Y87G2A.k - Caenorhabditis elegans 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 4.9E-50
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 5.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499995.2 6 102-124,137-159,174-196,365-387,397-411,432-454
Y55F3BL.2 6 102-124,137-159,174-196,365-387,397-411,432-454
GENEFINDER00000006749 3 99-121,134-156,202-224
Sequence
Target Sequence 
>C. ELEGANS:186650_AT
tcttctgttcgtgacgctcatcaatatgtgtgcagtggtgggcattggtgttatgcgata
tttgacaaaaaatacatataatcagataatcacactattcgtcggtctcggagttggatc
gttgtcgggttccagtttttatcatttgttgccacaattcgaaatcgttgaaattttgaa
aaaaaaaaactacaagtttttcgcgaaaaacgctcacccatcactaatggacgaagtaga
tgagaatggtgtaccaactcattcatatcttcatatggctcatatttcaattctcggcgt
ctacgcgttcttcttttgtgataaacttatcaagattattctcgaaattcgaaaaaaaaa
tcaacacattcaccatcgccgactatccatcgaaaatccgggaatgacgacagaaagaag
cgattccacatttgtcacagatgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGTTCGTGACGCTCATCAAT 350 617 339 Antisense
GATAATCACACTATTCGTCGGTCTC 113 423 423 Antisense
TATTCGTCGGTCTCGGAGTTGGATC 438 605 434 Antisense
GAGTTGGATCGTTGTCGGGTTCCAG 706 391 449 Antisense
GTCGGGTTCCAGTTTTTATCATTTG 290 473 462 Antisense
AACGCTCACCCATCACTAATGGACG 546 143 547 Antisense
GGTGTACCAACTCATTCATATCTTC 582 499 586 Antisense
TCTACGCGTTCTTCTTTTGTGATAA 249 615 638 Antisense
AAAAATCAACACATTCACCATCGCC 635 129 694 Antisense
CCATCGCCGACTATCCATCGAAAAT 634 271 711 Antisense
TTCCACATTTGTCACAGATGCCGGA 565 699 762 Antisense
Sequence Source Affymetrix Proprietary Database