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[186649_s_at]

Description F36H12.11 /REP_DB=WormBase Gene ID /WP=CE09982 /TR=O76710 /GB=AAC26940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.9
(-2.7)
A 		1.1
(-3)
A 		2.8
(-2.7)
A 		39.6
(3)
A 		39
B 9
(-1.8)
A 		2
(-3)
A 		37.2
(3)
A 		9.5
(-1.7)
A 		35
C 1.6
(-3)
A 		2.4
(-2.9)
A 		3.1
(-2.8)
A 		44.6
(3)
A 		43
avr 4.5
(-2.4) 		1.8
(-3) 		14.4
(-0.4) 		31.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 3.3
(-3)
A 		3.8
(-3)
A 		27.1
(-2.7)
A 		31.1
(-2.6)
A 		240.9
(0.2)
P 		455.3
(3)
P 		452
B 1.4
(-3)
A 		28.6
(-2.6)
A 		2.4
(-3)
A 		46.9
(-2.4)
A 		307.9
(1.3)
P 		433.4
(3)
P 		432
C 1.1
(-3)
A 		27.7
(-2.7)
A 		2
(-3)
A 		57.2
(-2.3)
A 		297.5
(0.6)
P 		490.6
(3)
P 		490
avr 1.9
(-3) 		20
(-2.8) 		10.5
(-2.9) 		45.1
(-2.4) 		282.1
(0.7) 		459.8
(3) 		458
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-2)
A 		0.2
(-3)
A 		0.7
(-2.5)
A 		5.8
(3)
A 		6
B 2.9
(-1.2)
A 		0.5
(-3)
A 		8.6
(3)
A 		2
(-1.9)
A 		8
C 0.5
(-3)
A 		0.7
(-2.8)
A 		1.1
(-2.5)
A 		7.5
(3)
A 		7
avr 1.5
(-1.7) 		0.5
(-3) 		3.5
(0.9) 		5.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.4
(-3)
A 		5.9
(-2.7)
A 		7.9
(-2.6)
A 		72.7
(0.9)
P 		110.8
(3)
P 		110
B 0.5
(-3)
A 		9.5
(-2.7)
A 		0.6
(-3)
A 		12.4
(-2.6)
A 		125.1
(1.6)
P 		161.6
(3)
P 		161
C 0.4
(-3)
A 		8.5
(-2.7)
A 		0.5
(-3)
A 		11.5
(-2.6)
A 		96.3
(0.5)
P 		164.2
(3)
P 		164
avr 0.5
(-3) 		6.5
(-2.8) 		2.3
(-2.9) 		10.6
(-2.6) 		98
(1) 		145.5
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10603
Sequence Type Exemplar sequence
Representative Public ID F36H12.11 NCBI
Target Description F36H12.11 /REP_DB=WormBase Gene ID /WP=CE09982 /TR=O76710 /GB=AAC26940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068316(11), NM_068356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068316 NCBI Caenorhabditis elegans R13H9.1 (R13H9.1) mRNA, complete cds. 11/11 None
NM_068356 NCBI Caenorhabditis elegans F36H12.11 (F36H12.11) mRNA, complete cds. 11/11 None
SNAP00000002636 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5255901:5257961:-1 11/11 None
GENEFINDER00000002664 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5255147:5256736:-1 11/11 None
SNAP00000029408 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5067690:5069745:1 11/11 None
GENEFINDER00000029414 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5068586:5069745:1 11/11 None
R13H9.1 ENSEMBL cdna:known chromosome:CEL140:IV:5068858:5069843:1 gene:R13H9.1 11/11 None
F36H12.11 ENSEMBL cdna:known chromosome:CEL140:IV:5255901:5256781:-1 gene:F36H12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5068919-5069751(+) 99.69 99.69
chrII:11338453-11339431(-) 92.28 92.28
chrIV:5255906-5256743(-) 99.69 99.69
Public Domain and Genome References
Gene Title

Ensembl R13H9.1
F36H12.11
Entrez Gene 177278 Entrez gene
177302 Entrez gene
SwissProt O76710 EMBL-EBI
Q966G0 EMBL-EBI
WormBase CE09982 Wormbase
CE07447 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604221_AT similar to R13H9.1 cfa
CANINE_2:CFA.16707.1.A1_AT similar to R13H9.1 cfa
CANINE_2:CFA.16707.1.A1_S_AT similar to R13H9.1 cfa
CANINE_2:CFA.19978.1.S1_S_AT similar to R13H9.1 cfa
HU35KSUBB:RC_T55547_AT family with sequence similarity 82, member A hs
HU35KSUBD:RC_N93685_S_AT family with sequence similarity 82, member A hs
U133_X3P:HS2.9905.3.S1_3P_AT family with sequence similarity 82, member A hs
U133_X3P:HS2.9905.1.S1_3P_AT family with sequence similarity 82, member A hs
U133_X3P:HS.9905.0.A1_3P_S_AT family with sequence similarity 82, member A hs
U133_X3P:HS.9905.0.A1_3P_AT family with sequence similarity 82, member A hs
U133_X3P:235349_3P_AT family with sequence similarity 82, member A hs
HG-U133_PLUS_2:1553232_AT family with sequence similarity 82, member A hs
HG-U133_PLUS_2:1560042_AT family with sequence similarity 82, member A hs
HG-U133_PLUS_2:235349_AT family with sequence similarity 82, member A hs
HG-U133B:235349_AT family with sequence similarity 82, member A hs
HG-U95C:58388_AT family with sequence similarity 82, member A hs
HG-U95D:73676_AT Family with sequence similarity 82, member A hs
HG-U95D:89706_AT Family with sequence similarity 82, member A hs
MOE430B:1455063_AT expressed sequence AW061290 mm
MOUSE430_2:1455063_AT expressed sequence AW061290 mm
MG-U74BV2:164049_AT expressed sequence AW061290 mm
MG-U74CV2:165798_S_AT expressed sequence AW061290 mm
MOE430B:1438035_AT expressed sequence AW061290 mm
MOUSE430_2:1438035_AT expressed sequence AW061290 mm
MOE430B:1438036_X_AT expressed sequence AW061290 mm
MOUSE430_2:1438036_X_AT expressed sequence AW061290 mm
RG-U34C:RC_AI235895_AT similar to hypothetical protein FLJ32954 rn
RAE230B:1379636_AT similar to hypothetical protein FLJ32954 rn
RAT230_2:1379636_AT similar to hypothetical protein FLJ32954 rn
Protein Similarities
Method ID Description E-Value
blast AAK85491 Hypothetical protein R13H9.1 [Caenorhabditis elegans] ref|NP_500717.1| R13H9.1 [Caenorhabditis elegans] 1.0E-127
blast CAA90085 Hypothetical protein B0491.3 [Caenorhabditis elegans] ref|NP_496422.1| B0491.3 [Caenorhabditis elegans] 1.0E-125
blast CAA90085 Hypothetical protein B0491.3 [Caenorhabditis elegans] ref|NP_496422.1| B0491.3 [Caenorhabditis elegans] 1.0E-124
blast AAC26940 Hypothetical protein F36H12.11 [Caenorhabditis elegans] ref|NP_500757.1| F36H12.11 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:186649_S_AT
gaagtctgcatgtgttccaaaagctcaacgtaaggcaagtgtcaccgaaggactcaagtt
tgctgaagaagctgtccagaaggatccaaaccatttcaaggcgctgaagtggaatgctgt
gttgactggacaagcaaccgaatatatggcaacgaaagaaaagttggaatgcagtaagaa
gttcaaggaattgctcgacaaagctcttgctaaggagccaaaggatacgtactcggtggc
atctctgacatggcttgagaagaagcttgctgccacgttctatcagcaaccaccatcaca
ttcctatgaagaggccaacgaggatttccttgctgcttataaggtcaatccaaaatggat
ggagaacacattttatgtgtccaaatgctacgtagcaattaaagacaagaacaacgctcg
caagtaccttaccgaagtgtgtgacatcgaaccgtattccgacgctgaacaagagtttgc
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCTGCATGTGTTCCAAAAGCT 404 333 147 Antisense
CTCAACGTAAGGCAAGTGTCACCGA 252 227 170 Antisense
CCATCACATTCCTATGAAGAGGCCA 406 271 439 Antisense
CTTGCTGCTTATAAGGTCAATCCAA 7 219 475 Antisense
CACATTTTATGTGTCCAAATGCTAC 264 197 513 Antisense
GACAAGAACAACGCTCGCAAGTACC 305 365 550 Antisense
ACGCTCGCAAGTACCTTACCGAAGT 402 91 560 Antisense
GTACCTTACCGAAGTGTGTGACATC 160 459 570 Antisense
GTGACATCGAACCGTATTCCGACGC 636 481 587 Antisense
ACCGTATTCCGACGCTGAACAAGAG 226 89 597 Antisense
CCGACGCTGAACAAGAGTTTGCCGA 648 263 605 Antisense
Sequence Source Affymetrix Proprietary Database