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[186647_at]

Description Y105C5B.27 /REP_DB=WormBase Gene ID /WP=CE24077 /TR=Q9NAL6 /GB=CAB54375.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 09      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 47.4
(-3)
A 		63.1
(1.2)
M 		69.6
(3)
P 		61.2
(0.7)
A 		22
B 69.9
(0.8)
P 		89.5
(3)
P 		82.6
(2.2)
P 		37.2
(-3)
A 		52
C 63.6
(-2.7)
M 		100.1
(3)
P 		61.8
(-3)
P 		92.3
(1.8)
P 		38
avr 60.3
(-3) 		84.2
(3) 		71.3
(-0.2) 		63.6
(-2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 74.4
(3)
P 		51.3
(-1.1)
A 		66
(1.5)
P 		42.8
(-2.6)
P 		40.6
(-3)
A 		43.9
(-2.4)
A 		34
B 88
(3)
P 		49.3
(-1.4)
M 		69.9
(1)
P 		68
(0.7)
P 		34.7
(-3)
P 		50.9
(-1.2)
P 		53
C 59.8
(-0.2)
P 		23
(-3)
A 		73.6
(0.9)
M 		101.3
(3)
P 		78.5
(1.3)
P 		45.3
(-1.3)
P 		78
avr 74.1
(3) 		41.2
(-3) 		69.8
(2.2) 		70.7
(2.4) 		51.3
(-1.2) 		46.7
(-2) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 17.2
(2.3)
A 		13.7
(0.1)
M 		18.2
(3)
P 		9
(-3)
A 		9
B 22.3
(3)
P 		22.1
(2.9)
P 		19.1
(1.7)
P 		7.9
(-3)
A 		14
C 21
(-0.5)
M 		28.8
(3)
P 		21.6
(-0.3)
P 		15.6
(-3)
P 		13
avr 20.2
(2.3) 		21.5
(3) 		19.6
(1.9) 		10.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.7
(-0.6)
P 		18.2
(3)
A 		14.4
(-0)
P 		10.8
(-2.9)
P 		12.2
(-1.8)
A 		10.7
(-3)
A 		8
B 30.6
(3)
P 		16.4
(-2.2)
M 		17
(-1.9)
P 		18
(-1.6)
P 		14.1
(-3)
P 		19
(-1.2)
P 		17
C 22.1
(1.9)
P 		7
(-3)
A 		18.7
(0.8)
M 		20.4
(1.4)
P 		25.4
(3)
P 		15.2
(-0.3)
P 		18
avr 22.1
(3) 		13.9
(-3) 		16.7
(-1) 		16.4
(-1.2) 		17.2
(-0.6) 		15
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9267
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.27 NCBI
Target Description Y105C5B.27 /REP_DB=WormBase Gene ID /WP=CE24077 /TR=Q9NAL6 /GB=CAB54375.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070515 NCBI Caenorhabditis elegans Y105C5B.27 (Y105C5B.27) mRNA, complete cds. 11/11 None
GENEFINDER00000018424 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16161556:16162846:1 11/11 None
Y105C5B.27 ENSEMBL cdna:known chromosome:CEL140:IV:16161556:16162846:1 gene:Y105C5B.27 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018414 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16162031-16162852(+) 22.22 62.16
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.27
Entrez Gene 190903 Entrez gene
SwissProt Q9NAL6 EMBL-EBI
WormBase CE24077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54375 Hypothetical protein Y105C5B.27 [Caenorhabditis elegans] ref|NP_502916.1| Y105C5B.27 [Caenorhabditis elegans] 0.0
blast AAF36060 Hypothetical protein Y75D11A.5 [Caenorhabditis elegans] ref|NP_508324.1| Y75D11A.5 [Caenorhabditis elegans] 1.0E-96
blast CAE62427 Hypothetical protein CBG06517 [Caenorhabditis briggsae] 6.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502916.1 1 377-395
Y105C5B.27 1 377-395
GENEFINDER00000018424 1 377-395
Sequence
Target Sequence 
>C. ELEGANS:186647_AT
atctatgcttgtccgacctggattccaaaacttcgagtgagcattgagttcggcaatgag
aggacaattgcagaactctcaccgggagaaaagttcaagctgccaaaatctaacgtctac
atcacagcagtggggcttacctctccaccgttgcaagttcatactgccacattcatcgca
tcatatggggttggatccaaggagtcgaaatggacctcgtttacaatgactccaccttcg
gccgctgggagccccgccaagggttttcctggcgagttacaatgtcctactcgagcagat
gctgagtcatttaattgtgtcttcgacccggatctgtgtaagtgtattgggcacggaacc
caggtcaattgtcagtgtgctaacgagttgattcggaatacatcgtcttatgcttccccg
ttcgagcgtctgatgtcttctacttggaatttcggaaaatggagccttggaattgccaac
tacctgtttgatcaattcaaattcatcatcatactcgtgggttgcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTATGCTTGTCCGACCTGGATTC 447 31 640 Antisense
TCTCCACCGTTGCAAGTTCATACTG 101 609 781 Antisense
CATACTGCCACATTCATCGCATCAT 495 213 799 Antisense
GGACCTCGTTTACAATGACTCCACC 104 523 851 Antisense
ACAATGTCCTACTCGAGCAGATGCT 58 115 918 Antisense
TTAATTGTGTCTTCGACCCGGATCT 219 685 950 Antisense
GAACCCAGGTCAATTGTCAGTGTGC 401 345 995 Antisense
GGAATACATCGTCTTATGCTTCCCC 448 533 1034 Antisense
GCGTCTGATGTCTTCTACTTGGAAT 627 291 1065 Antisense
GGAATTGCCAACTACCTGTTTGATC 543 533 1108 Antisense
ATCATCATACTCGTGGGTTGCATCA 593 27 1144 Antisense
Sequence Source Affymetrix Proprietary Database