[Home] | [Total List]

[186646_at]

Description Y55F3AR.2 /REP_DB=WormBase Gene ID /WP=CE25493 /TR=Q9N357 /GB=AAF60805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 32      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 7.1
(3)
A 		4
(-3)
A 		6.1
(1.1)
A 		5.4
(-0.3)
A 		3
B 5.8
(-3)
A 		10.3
(-2.4)
A 		49.7
(3)
A 		12.7
(-2.1)
A 		44
C 7.3
(-3)
A 		11.5
(-1.9)
A 		9.3
(-2.5)
A 		30.1
(3)
A 		23
avr 6.7
(-3) 		8.6
(-2.2) 		21.7
(3) 		16.1
(0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 12.9
(3)
A 		3.1
(-3)
A 		3.5
(-2.8)
A 		3.7
(-2.6)
A 		3.6
(-2.7)
A 		8.6
(0.4)
A 		10
B 4.6
(-1.3)
A 		6.7
(3)
A 		5.9
(1.3)
A 		4
(-2.6)
A 		3.9
(-2.8)
A 		3.8
(-3)
A 		3
C 13.6
(3)
A 		4.5
(-2.3)
A 		11.7
(1.9)
A 		9.7
(0.8)
A 		5.7
(-1.6)
A 		3.2
(-3)
A 		10
avr 10.4
(3) 		4.8
(-2.6) 		7
(-0.4) 		5.8
(-1.6) 		4.4
(-3) 		5.2
(-2.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(3)
A 		0.9
(-2.7)
A 		1.6
(-0.3)
A 		0.8
(-3)
A 		2
B 1.8
(-3)
A 		2.6
(-2.5)
A 		11.5
(3)
A 		2.7
(-2.4)
A 		10
C 2.4
(-3)
A 		3.3
(-1)
A 		3.2
(-1.2)
A 		5.1
(3)
A 		3
avr 2.3
(-3) 		2.3
(-3) 		5.4
(3) 		2.9
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.4
(3)
A 		1.1
(-1.9)
A 		0.8
(-3)
A 		0.9
(-2.6)
A 		1.1
(-1.9)
A 		2.1
(1.9)
A 		2
B 1.6
(0)
A 		2.2
(3)
A 		1.4
(-1)
A 		1
(-3)
A 		1.6
(0)
A 		1.4
(-1)
A 		1
C 5
(3)
A 		1.4
(-2.5)
A 		3
(-0.1)
A 		2
(-1.6)
A 		1.8
(-1.9)
A 		1.1
(-3)
A 		4
avr 3
(3) 		1.6
(-1.9) 		1.7
(-1.6) 		1.3
(-3) 		1.5
(-2.3) 		1.5
(-2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10366
Sequence Type Exemplar sequence
Representative Public ID Y55F3AR.2 NCBI
Target Description Y55F3AR.2 /REP_DB=WormBase Gene ID /WP=CE25493 /TR=Q9N357 /GB=AAF60805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067635(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067635 NCBI Caenorhabditis elegans Y55F3AR.2 (Y55F3AR.2) mRNA, complete cds. 10/11 None
SNAP00000019276 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1094547:1096498:1 10/11 None
GENEFINDER00000019279 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1094550:1096498:1 10/11 None
Y55F3AR.2 ENSEMBL cdna:known chromosome:CEL140:IV:1094550:1096558:1 gene:Y55F3AR.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1094555-1096504(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AR.2
Entrez Gene 176929 Entrez gene
SwissProt Q9N357 EMBL-EBI
WormBase CE34418 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261145_AT thioredoxin H-type 4 (TRX-H-4) (GREN) at
ATGENOME1:12940_AT thioredoxin H-type 4 (TRX-H-4) (GREN) at
ATGENOME1:12941_G_AT thioredoxin H-type 4 (TRX-H-4) (GREN) at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60805 Hypothetical protein Y55F3AR.2 [Caenorhabditis elegans] ref|NP_500036.2| Y55F3AR.2 [Caenorhabditis elegans] 3.0E-81
blast CAE63862 Hypothetical protein CBG08424 [Caenorhabditis briggsae] 2.0E-66
blast CAE68992 Hypothetical protein CBG14979 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.0E-33
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 5.0E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500036.2 1 187-209
Y55F3AR.2 1 187-209
SNAP00000019276 1 188-210
GENEFINDER00000019279 1 187-209
Sequence
Target Sequence 
>C. ELEGANS:186646_AT
tcgactagtgccgcatggtctggaactggacaacccaagagttggcaattttcaagattt
tggttcgaaaaatcgcaattttcactcaaaaattacctattttatgtgggtttgctcgag
aaaactcaaaatttttcgcattttcgtcaaaatcagcagaaaaaatatttctcttcagat
ttccgtctctccggctccacgaccggctcaagctcttccacgtcatcatcagctccacca
agagcctccggagctgctccaccacccgcgggaccaaatcctctggagccagttttccgc
ataattgagacaattaacgagcgcctacagggattcgggatttctggagtcaatttcgcc
ggttttcagcttcaaccattccatttgttgctcgccatcgcacttctcatcattttcggg
ccatttgggcttctgatcgcccttgccgtctgctttttcactcaaccacgtggaggagga
ccggctccgggagctccgagagctggtggatcgggagctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACTAGTGCCGCATGGTCTGGAA 640 601 331 Antisense
GGTCTGGAACTGGACAACCCAAGAG 10 503 347 Antisense
ATATTTCTCTTCAGATTTCCGTCTC 648 19 495 Antisense
AAATCCTCTGGAGCCAGTTTTCCGC 345 117 606 Antisense
TAACGAGCGCCTACAGGGATTCGGG 656 637 645 Antisense
GGGATTCGGGATTTCTGGAGTCAAT 672 495 660 Antisense
TGGAGTCAATTTCGCCGGTTTTCAG 332 547 675 Antisense
TTCAGCTTCAACCATTCCATTTGTT 355 687 695 Antisense
ATCATTTTCGGGCCATTTGGGCTTC 618 27 739 Antisense
CCATTTGGGCTTCTGATCGCCCTTG 2 269 751 Antisense
GAGAGCTGGTGGATCGGGAGCTGGC 429 395 828 Antisense
Sequence Source Affymetrix Proprietary Database