[Home] | [Total List]

[186644_at] G-protein coupled receptor, srv family

Description Y105C5B.10 /REP_DB=WormBase Gene ID /WP=CE24059 /TR=Q9U312 /GB=CAB60316.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 03      4grp_total > 06      6grp_cgc > 40      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 146.1
(-0.1)
P 		78.6
(-3)
A 		157.5
(0.4)
M 		218
(3)
P 		139
B 148.2
(3)
P 		134.4
(1.5)
P 		117.8
(-0.3)
M 		92.4
(-3)
A 		56
C 135.8
(-1.7)
P 		123.1
(-2.4)
P 		112.7
(-3)
A 		219.5
(3)
P 		107
avr 143.4
(-0.1) 		112
(-3) 		129.3
(-1.4) 		176.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 110.5
(1.4)
A 		124.7
(3)
P 		80.7
(-2.1)
A 		89.1
(-1.1)
A 		72.6
(-3)
A 		109.6
(1.3)
A 		52
B 132.4
(3)
P 		128.8
(2.7)
P 		90.3
(-1.1)
P 		89.6
(-1.1)
A 		77
(-2.3)
A 		70.1
(-3)
P 		62
C 113.9
(0.8)
P 		88.9
(-0.4)
A 		100.1
(0.1)
A 		156.5
(3)
P 		89.1
(-0.4)
P 		37.8
(-3)
A 		119
avr 118.9
(3) 		114.1
(2.4) 		90.4
(-0.7) 		111.7
(2.1) 		79.6
(-2.1) 		72.5
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 53.2
(3)
P 		17.1
(-3)
A 		41.2
(1)
M 		31.9
(-0.5)
P 		36
B 47.3
(3)
P 		33.2
(-0.1)
P 		27.3
(-1.3)
M 		19.7
(-3)
A 		28
C 44.9
(3)
P 		35.4
(-3)
P 		39.3
(-0.5)
A 		37
(-2)
P 		10
avr 48.5
(3) 		28.6
(-3) 		35.9
(-0.8) 		29.5
(-2.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.4
(-2.4)
A 		44.4
(3)
P 		17.6
(-3)
A 		22.6
(-1.9)
A 		21.9
(-2)
A 		26.7
(-1)
A 		27
B 46.1
(3)
P 		42.9
(2.2)
P 		21.9
(-3)
P 		23.7
(-2.6)
A 		31.3
(-0.7)
A 		26.1
(-2)
P 		24
C 42.2
(3)
P 		27.1
(-0.1)
A 		25.5
(-0.4)
A 		31.5
(0.8)
P 		28.8
(0.3)
P 		12.7
(-3)
A 		30
avr 36.2
(2.3) 		38.1
(3) 		21.7
(-3) 		25.9
(-1.5) 		27.3
(-1) 		21.8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9206
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.10 NCBI
Target Description Y105C5B.10 /REP_DB=WormBase Gene ID /WP=CE24059 /TR=Q9U312 /GB=CAB60316.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070498 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-16) (srv-16) mRNA, complete cds. 11/11 None
SNAP00000018393 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15931784:15932250:-1 10/11 None
Y105C5B.10 ENSEMBL cdna:known chromosome:CEL140:IV:15931784:15933876:-1 gene:Y105C5B.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018445 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15931789-15933882(-) 99.87 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-16
Ensembl Y105C5B.10
Entrez Gene 190892 Entrez gene
SwissProt Q9U312 EMBL-EBI
WormBase CE33202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60316 Hypothetical protein Y105C5B.10 [Caenorhabditis elegans] ref|NP_502899.2| Serpentine Receptor, class V family member (srv-16) [Caenorhabditis elegans] 0.0
blast CAA92611 Hypothetical protein T04B2.4 [Caenorhabditis elegans] ref|NP_501820.2| Serpentine Receptor, class V family member (srv-12) [Caenorhabditis elegans] 1.0E-127
blast CAE59941 Hypothetical protein CBG03427 [Caenorhabditis briggsae] 1.0E-125
blast CAB60316 Hypothetical protein Y105C5B.10 [Caenorhabditis elegans] ref|NP_502899.2| Serpentine Receptor, class V family member (srv-16) [Caenorhabditis elegans] 4.0E-54
blast T26384 hypothetical protein Y105C5B.h - Caenorhabditis elegans 4.0E-54
blast CAE68147 Hypothetical protein CBG13799 [Caenorhabditis briggsae] emb|CAE57377.1| Hypothetical protein CBG00323 [Caenorhabditis briggsae] 2.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502899.2 7 29-51,64-86,106-128,149-171,198-220,251-270,285-307
Y105C5B.10 7 29-51,64-86,106-128,149-171,198-220,251-270,285-307
SNAP00000018393 2 21-40,55-77
Sequence
Target Sequence 
>C. ELEGANS:186644_AT
gaacatcgtctctggatcgcaatatccattcagtatttgataggtttaataattggacta
tcaacttttctcaacgatgttcaattgttcagaaacagcaaaaatggcatagttcccaga
tttttaaataaatccatgaccaacacatttttcgcgataggtggtgtatttttgtttgtg
aactgcgtttatttagtggcgacttattgttacttgttttgggtgatacgaaaacgacag
aggataaatatgcctccgacaccagtgatcacaaattcccgctcgaaagcgaaaatgcga
gaagctcgcctcttcacaatgagcacaataattgtgggtgtgcagatgtgcattctcata
cttttcattttcaaaggcgcagatatcttggcattcacctctgatcagttctatttggtg
tataacgcagtgagcgacctctacgcaagtatcaacccatatcttctctgggttttctcc
gattctctccgaaaatatatcctgcaacggctaggcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCGTCTCTGGATCGCAATAT 539 349 190 Antisense
GCCTCCGACACCAGTGATCACAAAT 201 283 441 Antisense
TGATCACAAATTCCCGCTCGAAAGC 3 565 455 Antisense
AAGCTCGCCTCTTCACAATGAGCAC 435 149 491 Antisense
GTGCATTCTCATACTTTTCATTTTC 255 481 537 Antisense
GCGCAGATATCTTGGCATTCACCTC 72 289 566 Antisense
GCATTCACCTCTGATCAGTTCTATT 2 309 580 Antisense
CGCAGTGAGCGACCTCTACGCAAGT 682 251 615 Antisense
GCAAGTATCAACCCATATCTTCTCT 349 321 634 Antisense
TTCTCCGATTCTCTCCGAAAATATA 565 687 664 Antisense
TATATCCTGCAACGGCTAGGCTTCA 55 661 685 Antisense
Sequence Source Affymetrix Proprietary Database