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[186643_at]

Description Y95B8A.11 /REP_DB=WormBase Gene ID /WP=CE24690 /TR=Q9N2V7 /GB=AAF60907.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 69      4grp_high_8_8 > 13      6grp_total > 96      4grp_total > 03      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 77.3
(-1.4)
P 		63.7
(-3)
A 		78.4
(-1.2)
A 		113.5
(3)
M 		50
B 86.7
(-0.1)
P 		68.7
(-3)
P 		70.1
(-2.8)
P 		106.2
(3)
P 		38
C 83
(-2.2)
P 		83.8
(-2.2)
P 		61
(-3)
M 		226.6
(3)
P 		166
avr 82.3
(-2.1) 		72.1
(-2.8) 		69.8
(-3) 		148.8
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 64.1
(-3)
A 		64.9
(-2.9)
M 		77.6
(-0.7)
P 		83.2
(0.3)
P 		98.6
(3)
P 		96.9
(2.7)
P 		35
B 68.9
(0.4)
M 		67.4
(0.1)
P 		61.5
(-1.2)
A 		53
(-3)
P 		62.5
(-1)
P 		81.1
(3)
P 		28
C 68.3
(-3)
P 		101.7
(2.1)
P 		71.4
(-2.5)
P 		105.6
(2.7)
A 		95.1
(1.1)
P 		107.9
(3)
P 		40
avr 67.1
(-3) 		78
(-0.7) 		70.2
(-2.3) 		80.6
(-0.1) 		85.4
(0.9) 		95.3
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 28.1
(3)
P 		13.8
(-3)
A 		20.5
(-0.2)
A 		16.6
(-1.8)
M 		14
B 27.6
(3)
P 		17
(-2.6)
P 		16.2
(-3)
P 		22.6
(0.4)
P 		11
C 27.5
(-0.8)
P 		24.1
(-2)
P 		21.3
(-3)
M 		38.2
(3)
P 		17
avr 27.7
(3) 		18.3
(-3) 		19.3
(-2.4) 		25.8
(1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.8
(-3)
A 		23.1
(0.8)
M 		16.9
(-1.3)
P 		21.1
(0.1)
P 		29.8
(3)
P 		23.6
(0.9)
P 		18
B 24
(0.7)
M 		22.4
(0.1)
P 		14.9
(-2.7)
A 		14
(-3)
P 		25.4
(1.2)
P 		30.2
(3)
P 		16
C 25.3
(-0.6)
P 		31
(1.3)
P 		18.2
(-3)
P 		21.2
(-2)
A 		30.8
(1.2)
P 		36.1
(3)
P 		18
avr 20.4
(-1.3) 		25.5
(1) 		16.7
(-3) 		18.8
(-2.1) 		28.7
(2.4) 		30
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.11 NCBI
Target Description Y95B8A.11 /REP_DB=WormBase Gene ID /WP=CE24690 /TR=Q9N2V7 /GB=AAF60907.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058388(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058388 NCBI Caenorhabditis elegans Y95B8A.11 (Y95B8A.11) mRNA, complete cds. 9/11 None
Y95B8A.11 ENSEMBL cdna:known chromosome:CEL140:I:889934:895101:-1 gene:Y95B8A.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034255 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034291 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:889933-895101(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y95B8A.11
Entrez Gene 190809 Entrez gene
SwissProt Q9N2V7 EMBL-EBI
WormBase CE34441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60907 Hypothetical protein Y95B8A.11 [Caenorhabditis elegans] ref|NP_490789.2| Y95B8A.11 [Caenorhabditis elegans] 0.0
blast CAE71590 Hypothetical protein CBG18547 [Caenorhabditis briggsae] 1.0E-83
Sequence
Target Sequence 
>C. ELEGANS:186643_AT
agctggctccaattcttgcgagaattgctccgagggcttgtattgttaatttaggcattc
cgaagacgaaaaccttcccgttgccaccgcccatcgaatgccgctacgtggcagagttca
tcgccgatttcctccgcggcagaaatgcctggcaaactattcggtcttgtatttttccgg
aaaaaaatgctaaaaatctgaaattttatgtgctccgtgtcttctatttcgtcagtttgg
acctaaatttgcagaaaattctgaaaaaatgcgtctgtctccgtcatctgactctctcga
atgtttgtattttgatttttagagctttttcaacggatttctggcttttctcgttaaaaa
ttgatttttctggtcgaagatgtcggcgttttcgagctcgacactgtgaattcggtgctt
ttggacagttatttctattcgaggctagcaaactgttcgaggtggtcgacgacgataacg
agctggagggagaagttcagataaaaggtcagagtggagggtgcccgttgatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGGCTCCAATTCTTGCGAGAAT 631 81 665 Antisense
AATTGCTCCGAGGGCTTGTATTGTT 549 177 687 Antisense
CCCATCGAATGCCGCTACGTGGCAG 512 259 754 Antisense
GTGGCAGAGTTCATCGCCGATTTCC 416 491 772 Antisense
AATGCCTGGCAAACTATTCGGTCTT 629 165 808 Antisense
TGAAAAAATGCGTCTGTCTCCGTCA 448 573 926 Antisense
GTCATCTGACTCTCTCGAATGTTTG 442 467 947 Antisense
TTCAACGGATTTCTGGCTTTTCTCG 684 685 993 Antisense
AGATGTCGGCGTTTTCGAGCTCGAC 175 65 1042 Antisense
GAGCTCGACACTGTGAATTCGGTGC 666 387 1058 Antisense
GAGTGGAGGGTGCCCGTTGATCACC 327 401 1176 Antisense
Sequence Source Affymetrix Proprietary Database