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[186642_at]

Description Y55F3BL.1 /REP_DB=WormBase Gene ID /WP=CE25495 /TR=Q9N355 /GB=AAF60808.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 63      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 54      4grp_total > 05      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 174.2
(2.2)
P 		107.3
(-3)
A 		121.7
(-1.9)
P 		185.1
(3)
P 		78
B 125.9
(-0.9)
P 		92.7
(-3)
P 		98.8
(-2.6)
P 		186.6
(3)
P 		94
C 194.1
(-0.5)
P 		126.6
(-2.7)
P 		117
(-3)
P 		301.3
(3)
P 		184
avr 164.7
(-0.1) 		108.9
(-3) 		112.5
(-2.8) 		224.3
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 165.2
(0.6)
P 		169.3
(1.1)
P 		185.1
(3)
P 		135.5
(-3)
P 		145.3
(-1.8)
P 		149
(-1.4)
P 		50
B 123.1
(-1.5)
P 		111.8
(-3)
P 		114.9
(-2.6)
P 		127
(-1)
P 		158.1
(3)
P 		151.6
(2.2)
P 		46
C 139
(-3)
P 		168.7
(0)
P 		198.3
(3)
P 		188
(2)
P 		139.2
(-3)
P 		160.6
(-0.8)
P 		59
avr 142.4
(-3) 		149.9
(-1.1) 		166.1
(3) 		150.2
(-1) 		147.5
(-1.7) 		153.7
(-0.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 63.4
(3)
P 		23.3
(-3)
A 		31.8
(-1.7)
P 		27.1
(-2.4)
P 		40
B 40.2
(3)
P 		22.9
(-3)
P 		22.9
(-3)
P 		39.8
(2.9)
P 		17
C 64.2
(3)
P 		36.4
(-3)
P 		40.8
(-2.1)
P 		50.8
(0.1)
P 		28
avr 55.9
(3) 		27.5
(-3) 		31.8
(-2.1) 		39.2
(-0.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 30.5
(-3)
P 		60.2
(3)
P 		40.3
(-1)
P 		34.4
(-2.2)
P 		43.8
(-0.3)
P 		36.3
(-1.8)
P 		30
B 42.8
(-0.5)
P 		37.2
(-1.5)
P 		27.9
(-3)
P 		33.6
(-2.1)
P 		64.3
(3)
P 		56.5
(1.7)
P 		36
C 51.5
(2.1)
P 		51.5
(2.1)
P 		50.5
(1.8)
P 		37.8
(-3)
P 		45.1
(-0.3)
P 		53.8
(3)
P 		16
avr 41.6
(-0.6) 		49.6
(2.4) 		39.6
(-1.4) 		35.3
(-3) 		51.1
(3) 		48.9
(2.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10789
Sequence Type Exemplar sequence
Representative Public ID Y55F3BL.1 NCBI
Target Description Y55F3BL.1 /REP_DB=WormBase Gene ID /WP=CE25495 /TR=Q9N355 /GB=AAF60808.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067593 NCBI Caenorhabditis elegans Y55F3BL.1 (Y55F3BL.1) mRNA, complete cds. 11/11 None
SNAP00000006745 ENSEMBL cdna:SNAP chromosome:CEL140:IV:799143:812130:1 9/11 None
GENEFINDER00000006750 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:805133:806153:1 11/11 None
Y55F3BL.1 ENSEMBL cdna:known chromosome:CEL140:IV:801866:806153:1 gene:Y55F3BL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:800660-806159(+) 93.76 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3BL.1
Entrez Gene 190311 Entrez gene
SwissProt Q9N355 EMBL-EBI
WormBase CE36753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60808 Hypothetical protein Y55F3BL.1 [Caenorhabditis elegans] ref|NP_499994.2| Y55F3BL.1 [Caenorhabditis elegans] 0.0
blast AAF60808 Hypothetical protein Y55F3BL.1 [Caenorhabditis elegans] ref|NP_499994.2| Y55F3BL.1 [Caenorhabditis elegans] 1.0E-139
blast AAF60808 Hypothetical protein Y55F3BL.1 [Caenorhabditis elegans] ref|NP_499994.2| Y55F3BL.1 [Caenorhabditis elegans] 1.0E-129
blast CAE56266 Hypothetical protein CBG23911 [Caenorhabditis briggsae] 6.0E-64
blast CAE56268 Hypothetical protein CBG23913 [Caenorhabditis briggsae] 9.0E-61
blast CAE56268 Hypothetical protein CBG23913 [Caenorhabditis briggsae] 1.0E-55
blast CAE56268 Hypothetical protein CBG23913 [Caenorhabditis briggsae] 4.0E-39
blast CAE56266 Hypothetical protein CBG23911 [Caenorhabditis briggsae] 6.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 9.8E-5
Sequence
Target Sequence 
>C. ELEGANS:186642_AT
gaaaagcggattgggcacctggctccaccacaagctccaactcctcatctccccccacca
aaaaatccaaaccatctacgtcatcggaaacggtcatttcgacggctcaacggagcccgg
agcccaccaacttgctcttttcctggaaatttctgagcaattccagtgtcccatcatttt
ccaagagccagtgtgctctgccacggagctcaaatggctcgaatcaaaaaacgttgagat
tcgtcgagaaatggacgcaaaaatcgatatttgcgaggaaaaatcgatatcatcgatgtt
atcgattttcgcattcatccacggagaacacgagattttcaacgaatttttagaatttaa
cgccggaaaaatcgataatctaattgtgatcggcaacgactacggcggtgccaactggga
attgtcgaaaaatcgcgaaaaaatgcctaaaatcacggaattttgcgaaaaatcgataat
caccgcgtttccggcgatctacgaaccgaattccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGCGGATTGGGCACCTGGCTC 674 353 1038 Antisense
TTCGACGGCTCAACGGAGCCCGGAG 614 607 1135 Antisense
ACCAACTTGCTCTTTTCCTGGAAAT 446 85 1163 Antisense
TTCTGAGCAATTCCAGTGTCCCATC 410 693 1188 Antisense
TCCCATCATTTTCCAAGAGCCAGTG 62 599 1206 Antisense
TGTGCTCTGCCACGGAGCTCAAATG 517 555 1229 Antisense
GTTATCGATTTTCGCATTCATCCAC 321 447 1335 Antisense
TTGTGATCGGCAACGACTACGGCGG 199 703 1421 Antisense
GACTACGGCGGTGCCAACTGGGAAT 570 361 1435 Antisense
AATCGATAATCACCGCGTTTCCGGC 110 169 1508 Antisense
GGCGATCTACGAACCGAATTCCAAC 674 539 1530 Antisense
Sequence Source Affymetrix Proprietary Database