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[186641_at] 7TM chemoreceptor, srj family

Description T28A11.10 /REP_DB=WormBase Gene ID /WP=CE17269 /TR=P91506 /GB=AAC48131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 27      6grp_cgc > 21      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 62.3
(-3)
A 		64
(-2.9)
P 		88.8
(-1.7)
M 		180.5
(3)
P 		118
B 86.8
(1.6)
P 		100.5
(3)
P 		42.6
(-3)
M 		54.4
(-1.8)
A 		58
C 81.3
(-0.3)
P 		120
(3)
P 		50.5
(-3)
A 		101.1
(1.4)
P 		70
avr 76.8
(-1.1) 		94.8
(1) 		60.6
(-3) 		112
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 111.1
(3)
P 		67.9
(0.3)
P 		38.6
(-1.6)
M 		60.2
(-0.2)
A 		53.8
(-0.6)
P 		16.6
(-3)
A 		95
B 66.3
(3)
P 		45.9
(0.1)
A 		40.7
(-0.7)
A 		57.4
(1.7)
A 		60.5
(2.2)
A 		24.3
(-3)
P 		42
C 38.8
(-0.8)
A 		46.7
(-0)
A 		76.9
(3)
P 		16.7
(-3)
A 		43.3
(-0.3)
A 		41.7
(-0.5)
A 		60
avr 72.1
(3) 		53.5
(0.5) 		52.1
(0.3) 		44.8
(-0.7) 		52.5
(0.4) 		27.5
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 22.7
(1.2)
A 		13.9
(-3)
P 		23.2
(1.5)
M 		26.4
(3)
P 		13
B 27.7
(3)
P 		24.8
(2)
P 		9.9
(-3)
M 		11.6
(-2.4)
A 		18
C 26.9
(0.4)
P 		34.5
(3)
P 		17.6
(-2.8)
A 		17
(-3)
P 		18
avr 25.8
(3) 		24.4
(2.1) 		16.9
(-3) 		18.3
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 20.5
(1.9)
P 		24.1
(3)
P 		8.4
(-1.7)
M 		15.3
(0.4)
A 		16.2
(0.6)
P 		4.1
(-3)
A 		20
B 23.1
(2.4)
P 		15.3
(-0.6)
A 		9.9
(-2.7)
A 		15.2
(-0.6)
A 		24.6
(3)
A 		9.1
(-3)
P 		16
C 14.4
(1.1)
A 		14.2
(1)
A 		19.6
(3)
P 		3.3
(-3)
A 		14
(0.9)
A 		14
(0.9)
A 		16
avr 19.3
(3) 		17.9
(2.2) 		12.6
(-0.9) 		11.3
(-1.7) 		18.3
(2.4) 		9.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14867
Sequence Type Exemplar sequence
Representative Public ID T28A11.10 NCBI
Target Description T28A11.10 /REP_DB=WormBase Gene ID /WP=CE17269 /TR=P91506 /GB=AAC48131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071489 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-7) (srj-7) mRNA, complete cds. 11/11 None
SNAP00000028201 ENSEMBL cdna:SNAP chromosome:CEL140:V:3244968:3246549:1 11/11 None
GENEFINDER00000028224 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3245150:3248967:1 11/11 None
T28A11.10 ENSEMBL cdna:known chromosome:CEL140:V:3244830:3246549:1 gene:T28A11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3244829-3246549(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-7
Ensembl T28A11.10
Entrez Gene 189016 Entrez gene
SwissProt P91506 EMBL-EBI
WormBase CE17269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503890 Serpentine Receptor, class J family member (srj-7) [Caenorhabditis elegans] gb|AAC48131.1| Serpentine receptor, class j protein 7 [Caenorhabditis elegans] 0.0
blast NP_503891 Serpentine Receptor, class J family member (srj-8) [Caenorhabditis elegans] gb|AAC48121.1| Serpentine receptor, class j protein 8 [Caenorhabditis elegans] 0.0
blast NP_503890 Serpentine Receptor, class J family member (srj-7) [Caenorhabditis elegans] gb|AAC48131.1| Serpentine receptor, class j protein 7 [Caenorhabditis elegans] 1.0E-175
blast NP_503890 Serpentine Receptor, class J family member (srj-7) [Caenorhabditis elegans] gb|AAC48131.1| Serpentine receptor, class j protein 7 [Caenorhabditis elegans] 1.0E-139
blast AAD14729 Serpentine receptor, class j protein 9 [Caenorhabditis elegans] ref|NP_503963.1| Serpentine Receptor, class J family member (srj-9) [Caenorhabditis elegans] 1.0E-134
blast NP_503891 Serpentine Receptor, class J family member (srj-8) [Caenorhabditis elegans] gb|AAC48121.1| Serpentine receptor, class j protein 8 [Caenorhabditis elegans] 1.0E-125
blast AAD14729 Serpentine receptor, class j protein 9 [Caenorhabditis elegans] ref|NP_503963.1| Serpentine Receptor, class J family member (srj-9) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503890.1 7 15-32,44-66,99-118,125-147,199-221,247-269,284-306
T28A11.10 7 15-32,44-66,99-118,125-147,199-221,247-269,284-306
SNAP00000028201 5 53-72,79-101,153-175,201-223,238-260
GENEFINDER00000028224 11 5-27,34-56,107-129,155-177,192-214,267-289,349-371,384-406,456-478,504-526,541-563
Sequence
Target Sequence 
>C. ELEGANS:186641_AT
gatctgccagaattgccttgcggccgacgacgaagttaggaaaatagtgcgctcgtcgtt
catagatcagtacggagaagagtccaatggagttccaatgttggcagctctctattgggg
tgtccgtccaggtatccaatttcgcagctggcttggaatcattcttcttactattatttc
atggtactcaatggcggtttattttgttcttgggtataaaataattcacaaaattcggtg
catgactattaatcgaacgttgagtgcaactagtttacgacttcagaggcagctttttgt
gactttggttgtacagacctgcatcccaattgtcgcaagcttcttaccaactgtcatctc
ctggtacgcaccaattttcggaattgacattggttggtggaacacaaacgtctccacaat
tgcactagctgccttcccatgcattgacccgctagctgtgataattttggttccgaacta
cagaaacacactactcagacgtccaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGCCAGAATTGCCTTGCGGCC 51 419 459 Antisense
ATAGTGCGCTCGTCGTTCATAGATC 140 23 502 Antisense
TCCGTCCAGGTATCCAATTTCGCAG 705 583 581 Antisense
CGCAGCTGGCTTGGAATCATTCTTC 194 255 601 Antisense
GAGGCAGCTTTTTGTGACTTTGGTT 161 405 744 Antisense
TTTGGTTGTACAGACCTGCATCCCA 291 667 762 Antisense
CTGCATCCCAATTGTCGCAAGCTTC 19 239 777 Antisense
TCGCAAGCTTCTTACCAACTGTCAT 197 597 791 Antisense
CAAACGTCTCCACAATTGCACTAGC 621 191 863 Antisense
TGCATTGACCCGCTAGCTGTGATAA 260 579 898 Antisense
AACACACTACTCAGACGTCCAATTT 256 135 943 Antisense
Sequence Source Affymetrix Proprietary Database