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[186639_at]

Description F36H12.16 /REP_DB=WormBase Gene ID /WP=CE09986 /TR=O76718 /GB=AAC26938.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 32.1
(3)
A 		17.7
(-1.5)
A 		29.1
(2.1)
A 		12.9
(-3)
A 		19
B 27.2
(3)
A 		3.7
(-3)
A 		5.1
(-2.6)
A 		26
(2.7)
A 		24
C 1.8
(-3)
A 		12.9
(-1.1)
A 		9.5
(-1.7)
A 		37.6
(3)
A 		36
avr 20.4
(0.8) 		11.4
(-3) 		14.6
(-1.6) 		25.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.2
(-2.6)
A 		2
(-3)
A 		38
(3)
A 		11.2
(-1.5)
A 		8.2
(-2)
A 		11.9
(-1.4)
A 		36
B 27.7
(3)
A 		3.1
(-2.6)
A 		1.2
(-3)
A 		3.9
(-2.4)
A 		18.7
(1)
A 		14.4
(-0)
A 		27
C 22.1
(2.9)
A 		18
(1.7)
A 		4.8
(-2.1)
A 		1.8
(-3)
A 		3.8
(-2.4)
A 		22.4
(3)
A 		21
avr 18
(3) 		7.7
(-2) 		14.7
(1.4) 		5.6
(-3) 		10.2
(-0.8) 		16.2
(2.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		3.8
(-1.8)
A 		7.6
(0.5)
A 		1.9
(-3)
A 		10
B 8.7
(3)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		5.5
(0.5)
A 		8
C 0.6
(-3)
A 		3.7
(0.3)
A 		3.3
(-0.2)
A 		6.3
(3)
A 		6
avr 7
(3) 		2.8
(-3) 		4
(-1.3) 		4.6
(-0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.7
(-3)
A 		8.3
(3)
A 		2.8
(-1.3)
A 		2.5
(-1.6)
A 		2.9
(-1.3)
A 		8
B 9.6
(3)
A 		1
(-2.5)
A 		0.3
(-3)
A 		1
(-2.5)
A 		7.6
(1.7)
A 		5.4
(0.3)
A 		9
C 8.2
(3)
A 		5.5
(0.9)
A 		1.2
(-2.4)
A 		0.4
(-3)
A 		1.2
(-2.4)
A 		7.5
(2.5)
A 		8
avr 6.2
(3) 		2.4
(-1.8) 		3.3
(-0.6) 		1.4
(-3) 		3.8
(-0) 		5.3
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10715
Sequence Type Exemplar sequence
Representative Public ID F36H12.16 NCBI
Target Description F36H12.16 /REP_DB=WormBase Gene ID /WP=CE09986 /TR=O76718 /GB=AAC26938.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068365 NCBI Caenorhabditis elegans F36H12.16 (F36H12.16) mRNA, complete cds. 11/11 None
SNAP00000002644 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5269189:5270843:-1 9/11 None
GENEFINDER00000002659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5270415:5272336:-1 10/11 None
F36H12.16 ENSEMBL cdna:known chromosome:CEL140:IV:5270361:5270885:-1 gene:F36H12.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5270366-5270891(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.16
Entrez Gene 185401 Entrez gene
SwissProt O76718 EMBL-EBI
WormBase CE09986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26938 Hypothetical protein F36H12.16 [Caenorhabditis elegans] ref|NP_500766.1| F36H12.16 [Caenorhabditis elegans] 5.0E-64
blast AAC26938 Hypothetical protein F36H12.16 [Caenorhabditis elegans] ref|NP_500766.1| F36H12.16 [Caenorhabditis elegans] 3.0E-46
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 4.0E-30
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:186639_AT
cagacttgaatctcagttttccatcaacggatccatgatagtacttatcaacggagcaga
gccgtcgttagaaagccacgtagcattttatgagactggaacatttacggttgaacaggg
tgaaatgaggatgatcgagctgaaatatcaatcaactatggaaaatattcacgctttttt
ggatgttgtaaccggagccatcgatattcatctgtcaccttgtaaaagtcaagaaacaga
cattttctactctaaccttgccgcaggatctcatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACTTGAATCTCAGTTTTCCATC 288 205 21 Antisense
CAGTTTTCCATCAACGGATCCATGA 599 205 34 Antisense
TAGTACTTATCAACGGAGCAGAGCC 528 653 59 Antisense
AGCAGAGCCGTCGTTAGAAAGCCAC 456 73 75 Antisense
GAAAGCCACGTAGCATTTTATGAGA 244 359 91 Antisense
GAGACTGGAACATTTACGGTTGAAC 483 393 112 Antisense
TTCACGCTTTTTTGGATGTTGTAAC 461 683 188 Antisense
GTAACCGGAGCCATCGATATTCATC 465 461 208 Antisense
GATATTCATCTGTCACCTTGTAAAA 299 427 223 Antisense
CAGACATTTTCTACTCTAACCTTGC 415 205 257 Antisense
CTAACCTTGCCGCAGGATCTCATAG 196 223 272 Antisense
Sequence Source Affymetrix Proprietary Database