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[186638_s_at]

Description ZK512.5 /REP_DB=WormBase Gene ID /WP=CE00411 /TR=SW:P34643 /GB=CAA80146.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 84      6grp_total > 38      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 680.3
(3)
P 		550
(-3)
P 		623.9
(0.4)
P 		572.8
(-2)
P 		130
B 661.9
(2.9)
P 		663.6
(3)
P 		634.9
(1.1)
P 		573.9
(-3)
P 		90
C 640.5
(2.4)
P 		596.2
(0.8)
P 		657.8
(3)
P 		489
(-3)
P 		169
avr 660.9
(3) 		603.3
(0) 		638.9
(1.9) 		545.2
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 675.6
(2.6)
P 		586
(1)
P 		368.1
(-3)
P 		544.4
(0.2)
P 		595.3
(1.1)
P 		697.8
(3)
P 		330
B 686.8
(3)
P 		584.6
(1)
P 		459.4
(-1.5)
P 		442.7
(-1.8)
P 		384.1
(-3)
P 		527.8
(-0.2)
P 		303
C 757.4
(3)
P 		560.4
(-1.5)
P 		606.5
(-0.4)
P 		492.9
(-3)
P 		672.4
(1.1)
P 		564.9
(-1.4)
P 		265
avr 706.6
(3) 		577
(-0.4) 		478
(-3) 		493.3
(-2.6) 		550.6
(-1.1) 		596.8
(0.1) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 247.7
(3)
P 		119.4
(-1.7)
P 		163.1
(-0.1)
P 		83.8
(-3)
P 		164
B 211.1
(3)
P 		163.9
(-0.2)
P 		147.1
(-1.3)
P 		122.3
(-3)
P 		89
C 212
(2.3)
P 		171.4
(0.6)
P 		229.3
(3)
P 		82.4
(-3)
P 		147
avr 223.6
(3) 		151.6
(-0.4) 		179.8
(0.9) 		96.2
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 124.5
(-0.9)
P 		208.4
(3)
P 		80.2
(-3)
P 		138.1
(-0.3)
P 		179.6
(1.7)
P 		169.9
(1.2)
P 		128
B 239
(3)
P 		194.6
(0.9)
P 		111.6
(-3)
P 		117.3
(-2.7)
P 		156.1
(-0.9)
P 		196.8
(1)
P 		127
C 280.7
(3)
P 		171
(-0.6)
P 		154.4
(-1.2)
P 		99.1
(-3)
P 		217.6
(0.9)
P 		189.1
(-0)
P 		182
avr 214.7
(3) 		191.3
(1.6) 		115.4
(-3) 		118.2
(-2.8) 		184.4
(1.2) 		185.3
(1.2) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186638_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7505
Sequence Type Exemplar sequence
Representative Public ID ZK512.5 NCBI
Target Description ZK512.5 /REP_DB=WormBase Gene ID /WP=CE00411 /TR=SW:P34643 /GB=CAA80146.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066621 NCBI Caenorhabditis elegans ZK512.5 (ZK512.5) mRNA, complete cds. 11/11 None
GENEFINDER00000002546 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9119465:9130408:1 11/11 None
SNAP00000002530 ENSEMBL cdna:SNAP chromosome:CEL140:III:9126142:9130408:1 11/11 None
ZK512.5.1 ENSEMBL cdna:known chromosome:CEL140:III:9125745:9130699:1 gene:ZK512.5 11/11 None
ZK512.5.2 ENSEMBL cdna:known chromosome:CEL140:III:9125745:9130703:1 gene:ZK512.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9125740-9130404(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK512.5
Entrez Gene 176289 Entrez gene
SwissProt P34643 EMBL-EBI
WormBase CE00411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80146 Hypothetical protein ZK512.5 [Caenorhabditis elegans] ref|NP_499022.1| ZK512.5 [Caenorhabditis elegans] sp|P34643|YOQ5_CAEEL Hypothetical protein ZK512.5 in chromosome III 0.0
blast CAE62771 Hypothetical protein CBG06940 [Caenorhabditis briggsae] 0.0
blast CAA80145 Hypothetical protein ZK512.3 [Caenorhabditis elegans] ref|NP_499021.1| CEll Death abnormality family member (ced-11) [Caenorhabditis elegans] sp|P34641|CED11_CAEEL Ced-11 protein 0.0
blast CAE62770 Hypothetical protein CBG06939 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002546 6 621-643,755-777,821-843,856-876,896-918,981-1003
Sequence
Target Sequence 
>C. ELEGANS:186638_S_AT
caacagctccaagtgtaccaacaccaccaccagccgtttcttctgctccggttcttcaac
aagcaacactaggacaagcatctattccaaatgctaaaactactgcgccgcctgtcccac
agaaacaacctgaacttgcattgaatgaacgaaaagcatctaaaggatggttcggatcga
ttaaggaaaaagtcatcaaatcgattccatcagcaaaccaaatgatcctgcctgacgatt
caaagccaagtatcgtttgggatcctgttcagaaaagatatgttggtgctggagtagaag
aagaggtcgtagctgctccaccgccagtcatgtcagctcctcatttgatgggtggaggtc
ctgattctaacaaatcgagcacgaatagtctgcgaagtgctagaagtggagttggatcac
gatatcttcaatcgggaatggccactagccaagcaccagctatggacactggaatgccac
cgatgatgcctccaaccatgccaatgtcattcagctttatgcctgcacccactgaagatg
attcctccgaatatgttgatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGCTCCAAGTGTACCAACACC 385 185 3092 Antisense
GCTCCGGTTCTTCAACAAGCAACAC 650 297 3136 Antisense
TGATCCTGCCTGACGATTCAAAGCC 347 565 3314 Antisense
GAAGAAGAGGTCGTAGCTGCTCCAC 173 341 3388 Antisense
ATGTCAGCTCCTCATTTGATGGGTG 282 49 3421 Antisense
GGTGGAGGTCCTGATTCTAACAAAT 445 499 3442 Antisense
GGGAATGGCCACTAGCCAAGCACCA 429 493 3525 Antisense
GACACTGGAATGCCACCGATGATGC 682 365 3556 Antisense
CCTCCAACCATGCCAATGTCATTCA 453 267 3580 Antisense
TGTCATTCAGCTTTATGCCTGCACC 389 559 3596 Antisense
GATTCCTCCGAATATGTTGATCCAT 684 431 3631 Antisense
Sequence Source Affymetrix Proprietary Database