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[186637_at]

Description Y32H12A.1 /REP_DB=WormBase Gene ID /WP=CE24198 /TR=Q9N539 /GB=AAF60488.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 24.2
(-3)
A 		54.5
(3)
A 		26.5
(-2.5)
A 		38.5
(-0.2)
A 		30
B 54.9
(2.9)
A 		55.7
(3)
A 		21.8
(-3)
A 		35.7
(-0.5)
A 		34
C 78
(3)
A 		28.1
(-1.3)
A 		7.6
(-3)
A 		72.9
(2.6)
A 		70
avr 52.4
(3) 		46.1
(1.9) 		18.6
(-3) 		49
(2.4) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 17.2
(-0.8)
A 		35.4
(2.6)
A 		29.3
(1.4)
A 		36.7
(2.8)
A 		37.6
(3)
A 		5.7
(-3)
A 		32
B 30.1
(-3)
A 		85.5
(3)
A 		44.4
(-1.5)
A 		32.1
(-2.8)
A 		32.9
(-2.7)
A 		33
(-2.7)
A 		55
C 2.9
(-3)
A 		81.1
(3)
A 		37.7
(-0.3)
A 		3.8
(-2.9)
A 		31.5
(-0.8)
A 		18.7
(-1.8)
A 		78
avr 16.7
(-3) 		67.3
(3) 		37.1
(-0.6) 		24.2
(-2.1) 		34
(-0.9) 		19.1
(-2.7) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.8
(0.1)
A 		11.8
(3)
A 		6.9
(-1.7)
A 		5.6
(-3)
A 		6
B 17.5
(3)
A 		13.7
(1.2)
A 		5.1
(-3)
A 		7.6
(-1.8)
A 		12
C 25.8
(3)
A 		8.1
(-1.6)
A 		2.6
(-3)
A 		12.3
(-0.5)
A 		23
avr 17.4
(3) 		11.2
(0) 		4.9
(-3) 		8.5
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.2
(-2)
A 		12.6
(3)
A 		6.4
(-0.3)
A 		9.3
(1.2)
A 		11.3
(2.3)
A 		1.4
(-3)
A 		11
B 10.5
(-2.4)
A 		28.5
(3)
A 		10.8
(-2.3)
A 		8.5
(-3)
A 		13.4
(-1.5)
A 		12.3
(-1.9)
A 		20
C 1.1
(-2.9)
A 		24.8
(3)
A 		9.6
(-0.8)
A 		0.8
(-3)
A 		10.2
(-0.7)
A 		6.3
(-1.6)
A 		24
avr 4.9
(-3) 		22
(3) 		8.9
(-1.6) 		6.2
(-2.5) 		11.6
(-0.6) 		6.7
(-2.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7449
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.1 NCBI
Target Description Y32H12A.1 /REP_DB=WormBase Gene ID /WP=CE24198 /TR=Q9N539 /GB=AAF60488.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065744 NCBI Caenorhabditis elegans Y32H12A.1 (Y32H12A.1) mRNA, complete cds. 11/11 None
SNAP00000037239 ENSEMBL cdna:SNAP chromosome:CEL140:III:5362243:5364313:1 11/11 None
Y32H12A.1 ENSEMBL cdna:known chromosome:CEL140:III:5362165:5364123:1 gene:Y32H12A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037249 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5362163-5364122(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32H12A.1
Entrez Gene 189583 Entrez gene
SwissProt Q9N539 EMBL-EBI
WormBase CE24198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60488 Hypothetical protein Y32H12A.1 [Caenorhabditis elegans] ref|NP_498145.1| Y32H12A.1 [Caenorhabditis elegans] 1.0E-161
blast AAF60488 Hypothetical protein Y32H12A.1 [Caenorhabditis elegans] ref|NP_498145.1| Y32H12A.1 [Caenorhabditis elegans] 1.0E-139
blast CAE61326 Hypothetical protein CBG05163 [Caenorhabditis briggsae] 2.0E-90
blast CAE61326 Hypothetical protein CBG05163 [Caenorhabditis briggsae] 3.0E-65
blast CAB01451 Hypothetical protein ZK863.5 [Caenorhabditis elegans] ref|NP_506057.1| Serpentine Receptor, class D (delta) family member (srd-4) [Caenorhabditis elegans] 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498145.1 6 60-78,88-110,122-144,191-213,240-262,272-294
Y32H12A.1 6 60-78,88-110,122-144,191-213,240-262,272-294
SNAP00000037239 7 27-49,62-84,94-113,152-174,206-228,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:186637_AT
tgtctccacatcattctgtcatgtccttgatgcagtacaccttcatgctttacaaaactg
gattctctctcaaattttgctcattggatttcgaacagcaatgctctcatcggctcagtc
atttatatcaatgaaaaggacaatcacattcttcagtggctacgaatctttctacaactc
gccaatacccttcacaatagcaatgcttctacttccaaatatccctcattactttcttgc
ctactgtttccgtcataaacagaataacgatttaaaaagaacaacaatgtcaatgacaac
tcttcgaatgcacagtactctccggaaagtgtcaactatgaaagcattcctcccactctt
cctattggcagatgtacttatttacttcttctgtcaattagaactgctacctccacagtt
tattgaatattttctaggcacgatctccagttccataaatatattgaatcccgtaatagc
tatgtgttgctttcgaccgtatcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTCCACATCATTCTGTCATGTC 228 559 402 Antisense
ATGCAGTACACCTTCATGCTTTACA 639 43 431 Antisense
CGAACAGCAATGCTCTCATCGGCTC 41 253 493 Antisense
GCTACGAATCTTTCTACAACTCGCC 478 303 560 Antisense
TCGCCAATACCCTTCACAATAGCAA 337 599 580 Antisense
GCAATGCTTCTACTTCCAAATATCC 79 323 601 Antisense
CAAATATCCCTCATTACTTTCTTGC 157 193 617 Antisense
TTCGAATGCACAGTACTCTCCGGAA 345 697 704 Antisense
CCCACTCTTCCTATTGGCAGATGTA 239 259 753 Antisense
ATTTTCTAGGCACGATCTCCAGTTC 128 15 830 Antisense
TGTGTTGCTTTCGACCGTATCGGAA 346 555 884 Antisense
Sequence Source Affymetrix Proprietary Database