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[186636_s_at]

Description C36E8.1 /REP_DB=WormBase Gene ID /WP=CE00909 /TR=SW:P48322 /GB=CAA84645.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 34      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 76      6grp_total > 90      4grp_total > 05      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2223
1 2 3 4 range
A 1270.2
(-0.3)
P 		492.8
(-3)
P 		502.8
(-3)
P 		2237.3
(3)
P 		1745
B 1238.8
(-0.9)
P 		475.8
(-3)
P 		544.5
(-2.8)
P 		2698.8
(3)
P 		2223
C 1193.4
(-0.8)
P 		847.3
(-2.2)
P 		660.3
(-3)
P 		2105.7
(3)
P 		1445
avr 1234.1
(-0.8) 		605.3
(-2.9) 		569.2
(-3) 		2347.3
(3) 		1778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 879.4
(-2.1)
P 		1117.3
(2.5)
P 		831.7
(-3)
P 		1142.3
(3)
P 		1011.8
(0.5)
P 		1114
(2.5)
P 		311
B 1056.2
(0)
P 		1140.5
(3)
P 		988.9
(-2.4)
P 		970.9
(-3)
P 		976.3
(-2.8)
P 		985.4
(-2.5)
P 		170
C 1215.1
(1.3)
P 		1053.9
(-0.8)
P 		1074.5
(-0.6)
P 		1342.3
(3)
P 		891.4
(-3)
P 		976.5
(-1.9)
P 		451
avr 1050.2
(-0.2) 		1103.9
(1.5) 		965
(-2.8) 		1151.8
(3) 		959.8
(-3) 		1025.3
(-1) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 462.5
(3)
P 		107
(-3)
P 		131.4
(-2.6)
P 		327.5
(0.7)
P 		356
B 395.1
(0.6)
P 		117.5
(-3)
P 		126.2
(-2.9)
P 		575.1
(3)
P 		458
C 395
(3)
P 		243.6
(-2.5)
P 		230.1
(-3)
P 		355
(1.5)
P 		165
avr 417.5
(3) 		156
(-3) 		162.6
(-2.8) 		419.2
(3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 162.1
(-3)
P 		397.4
(3)
P 		181.1
(-2.5)
P 		289.7
(0.3)
P 		305.3
(0.7)
P 		271.2
(-0.2)
P 		235
B 367.5
(1.9)
P 		379.6
(2.3)
P 		240.1
(-3)
P 		257.1
(-2.3)
P 		396.7
(3)
P 		367.4
(1.9)
P 		157
C 450.4
(3)
P 		321.6
(-1.3)
P 		273.5
(-2.9)
P 		269.9
(-3)
P 		288.4
(-2.4)
P 		326.9
(-1.1)
P 		181
avr 326.7
(1.2) 		366.2
(3) 		231.6
(-3) 		272.2
(-1.2) 		330.1
(1.4) 		321.8
(1) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186636_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6877
Sequence Type Exemplar sequence
Representative Public ID C36E8.1 NCBI
Target Description C36E8.1 /REP_DB=WormBase Gene ID /WP=CE00909 /TR=SW:P48322 /GB=CAA84645.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065402 NCBI Caenorhabditis elegans C36E8.1 (C36E8.1) mRNA, complete cds. 11/11 None
SNAP00000019685 ENSEMBL cdna:SNAP chromosome:CEL140:III:3999634:4003869:-1 11/11 None
GENEFINDER00000019690 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3999634:4003869:-1 11/11 None
C36E8.1.2 ENSEMBL cdna:known chromosome:CEL140:III:3999272:4004089:-1 gene:C36E8.1 11/11 None
C36E8.1.1 ENSEMBL cdna:known chromosome:CEL140:III:3999272:4004118:-1 gene:C36E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3999633-4003869(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E8.1
Entrez Gene 175517 Entrez gene
SwissProt P48322 EMBL-EBI
WormBase CE00909 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12613_AT RNA polymerase I specific transcription initiation factor RRN3 family protein at
ATH1-121501:267312_AT RNA polymerase I specific transcription initiation factor RRN3 family protein at
CANINE_2:CFAAFFX.28690.1.S1_AT similar to RRN3 RNA polymerase I transcription factor homolog cfa
DROSOPHILA_2:1638591_AT dm
DROSGENOME1:153698_AT dm
DROSGENOME1:146623_AT dm
DROSGENOME1:146622_AT dm
CHICKEN:GGA.17331.1.S1_S_AT similar to RRN3 gga
CHICKEN:GGA.3121.1.S1_A_AT similar to RRN3 gga
CHICKEN:GGA.4903.1.S1_AT similar to RRN3 gga
HG-U133_PLUS_2:216902_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133A_2:216902_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-FOCUS:216902_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133A:216902_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBA:AA242915_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBA:RC_AA040149_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBA:RC_AA598711_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBA:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBB:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBC:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBD:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HUGENEFL:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HC-G110:HUM_ALU_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HU35KSUBD:RC_W86482_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
U133_X3P:HS.189834.0.S1_3P_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
U133_X3P:HS.110103.3.A1_3P_A_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
U133_X3P:HS.110103.2.A1_3P_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
U133_X3P:HS.110103.1.S1_3P_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133A_2:222204_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133_PLUS_2:222204_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133A:222204_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133_PLUS_2:230328_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U133B:230328_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U95AV2:39820_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U95B:49184_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U95C:65518_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
HG-U95D:74687_AT RRN3 RNA polymerase I transcription factor homolog (yeast) hs
MU11KSUBA:AA466709_S_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MG-U74AV2:96781_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MG-U74CV2:133314_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MOE430A:1415725_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MOE430B:1415725_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MOUSE430A_2:1415725_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MOUSE430_2:1415725_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MU19KSUBB:TC29982_AT RRN3 RNA polymerase I transcription factor homolog (yeast) mm
MOUSE430_2:1425765_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MOE430A:1425765_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MOUSE430A_2:1425765_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MOUSE430_2:1425766_X_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MOE430A:1425766_X_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MOUSE430A_2:1425766_X_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MG-U74BV2:109486_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
MU19KSUBC:TC35741_AT RRN3 RNA polymerase I transcription factor homolog (yeast), mRNA (cDNA clone IMAGE:4504751) mm
RG-U34A:RC_AA894101_AT similar to AL023001 protein (predicted) rn
RAE230B:1380022_AT similar to AL023001 protein (predicted) rn
RAT230_2:1380022_AT similar to AL023001 protein (predicted) rn
YEAST_2:1770213_AT Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA Sc
Protein Similarities
Method ID Description E-Value
blast CAA84645 Hypothetical protein C36E8.1 [Caenorhabditis elegans] ref|NP_497803.1| C36E8.1 [Caenorhabditis elegans] sp|P48322|YPJ1_CAEEL Hypothetical protein C36E8.1 in chromosome III 0.0
blast CAE60101 Hypothetical protein CBG03634 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007991 EMBL-EBI RNA polymerase I specific transcription initiation factor RRN3 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186636_S_AT
tcaaatccttcccggacttcaaagacatggaacattttactcggtttctcaagcattttt
cctcgtctttgcgttcagatataaggaatttgtcaagaataaagatatgctggaaacaat
ccgtcgctggggagttggaagagttgtgcattctccgttggagcccctgaaatacgtgtc
aaaaccagttgccagatgcttttcagctataacaagatccttgcaacttgtctactgtaa
tcacatcattccaattgaagaagttcaacgaccatttgatgatatgttcccatttgattg
ttatcatttgaaagaaagcagcaagttcatgactccattaatgcgaaaattctctccatt
ggcggaagacatgtctacacttacaaaagcattgtgctggaatgctgcgacggctgataa
atcagaaaagtcagcagaggcagtttcaagttcagaaggtctcgatttcttggatgaaga
tgatgctatgatgatgggtggatcctcaggataccgcgaacgtacattctcctgtggaca
aagctcgctgatcaactactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATCCTTCCCGGACTTCAAAGA 388 629 1383 Antisense
CATTTTACTCGGTTTCTCAAGCATT 312 215 1415 Antisense
GGAAACAATCCGTCGCTGGGGAGTT 102 529 1494 Antisense
GAAGAGTTGTGCATTCTCCGTTGGA 467 337 1520 Antisense
GTTGGAGCCCCTGAAATACGTGTCA 340 435 1539 Antisense
ACCAGTTGCCAGATGCTTTTCAGCT 633 85 1566 Antisense
AAGATCCTTGCAACTTGTCTACTGT 346 155 1596 Antisense
ATGCGAAAATTCTCTCCATTGGCGG 659 39 1723 Antisense
TGCTGGAATGCTGCGACGGCTGATA 431 581 1777 Antisense
GAACGTACATTCTCCTGTGGACAAA 663 347 1900 Antisense
CAAAGCTCGCTGATCAACTACTCGG 225 193 1921 Antisense
Sequence Source Affymetrix Proprietary Database