[Home] | [Total List]

[186635_s_at]

Description C48B4.8 /REP_DB=WormBase Gene ID /WP=CE00484 /TR=SW:P34362 /GB=CAA82380.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 68.9
(-2.6)
A 		61.6
(-3)
A 		114.5
(0.1)
A 		162.6
(3)
A 		101
B 71.8
(-3)
A 		121.9
(2.8)
A 		116.9
(2.2)
A 		123.4
(3)
A 		52
C 108
(-3)
A 		140.8
(0.1)
A 		148.6
(0.8)
A 		171.7
(3)
P 		64
avr 82.9
(-3) 		108.1
(-0.8) 		126.7
(0.8) 		152.6
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 114.4
(-1.5)
A 		37.2
(-3)
A 		108.8
(-1.7)
A 		169.9
(-0.5)
M 		274.7
(1.5)
P 		355.6
(3)
P 		318
B 71.8
(-3)
A 		84.8
(-2.6)
A 		134.4
(-1.3)
A 		156.1
(-0.7)
A 		257
(2.1)
P 		288.6
(3)
P 		217
C 62.5
(-3)
A 		99.2
(-2.1)
A 		135.9
(-1.1)
A 		173.9
(-0.2)
P 		214
(0.9)
P 		297.5
(3)
P 		235
avr 82.9
(-2.8) 		73.7
(-3) 		126.4
(-1.7) 		166.6
(-0.7) 		248.6
(1.4) 		313.9
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 25.1
(1.3)
A 		13.4
(-3)
A 		29.9
(3)
A 		23.8
(0.8)
A 		17
B 22.9
(-3)
A 		30.1
(3)
A 		27.1
(0.5)
A 		26.3
(-0.2)
A 		7
C 35.7
(-1.2)
A 		40.5
(0)
A 		51.8
(3)
A 		29
(-3)
P 		23
avr 27.9
(-2.1) 		28
(-2) 		36.3
(3) 		26.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 21.1
(-2.4)
A 		13.2
(-3)
A 		23.7
(-2.1)
A 		43.1
(-0.6)
M 		82.9
(2.7)
P 		86.6
(3)
P 		73
B 25
(-3)
A 		28.2
(-2.8)
A 		32.6
(-2.4)
A 		41.3
(-1.8)
A 		104.4
(2.8)
P 		107.6
(3)
P 		83
C 23.2
(-3)
A 		30.3
(-2.4)
A 		34.6
(-2.1)
A 		35
(-2.1)
P 		69.2
(0.6)
P 		99.6
(3)
P 		76
avr 23.1
(-3) 		23.9
(-2.9) 		30.3
(-2.4) 		39.8
(-1.7) 		85.5
(2) 		97.9
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186635_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7525
Sequence Type Exemplar sequence
Representative Public ID C48B4.8 NCBI
Target Description C48B4.8 /REP_DB=WormBase Gene ID /WP=CE00484 /TR=SW:P34362 /GB=CAA82380.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066710 NCBI Caenorhabditis elegans C48B4.8 (C48B4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000040773 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9559871:9561131:-1 11/11 None
C48B4.8 ENSEMBL cdna:known chromosome:CEL140:III:9559800:9561131:-1 gene:C48B4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040760 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9559866-9561127(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.8
Entrez Gene 176351 Entrez gene
SwissProt P34362 EMBL-EBI
WormBase CE00484 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82380 Hypothetical protein C48B4.8 [Caenorhabditis elegans] ref|NP_499111.1| C48B4.8 [Caenorhabditis elegans] sp|P34362|YLH8_CAEEL Hypothetical protein C48B4.8 in chromosome III 1.0E-99
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499111.1 4 34-51,56-75,82-104,133-155
C48B4.8 4 34-51,56-75,82-104,133-155
GENEFINDER00000040773 4 34-51,56-75,82-104,133-155
Sequence
Target Sequence 
>C. ELEGANS:186635_S_AT
gttccgccgacatttctgtggtggccagcaaagcacgtcattctgtccataatccttgcc
aatgccatcataactacgttcttccttctccaagcatccaatattcttgcctcgatcctt
ctttgctcgattctgctatcaatcgtctttgcaatgggatacattcgcgagtcttttgcc
ctgatctacatacatttcatctactgtctcctctacatcgtattttcttttttattcatt
ccgactttctactacgatcagaaaatttgcaccaatgcagccatttgcaaaacagttcaa
gaatggttggaggaacttgtaacgaccgtcgcctctcgttggatttatgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCGCCGACATTTCTGTGGTGGC 595 441 76 Antisense
GCCAGCAAAGCACGTCATTCTGTCC 325 279 99 Antisense
CCATAATCCTTGCCAATGCCATCAT 56 271 122 Antisense
ATGCCATCATAACTACGTTCTTCCT 382 41 137 Antisense
AAGCATCCAATATTCTTGCCTCGAT 553 151 167 Antisense
CTTCTTTGCTCGATTCTGCTATCAA 364 221 193 Antisense
GGATACATTCGCGAGTCTTTTGCCC 677 509 232 Antisense
TCTTTTGCCCTGATCTACATACATT 82 617 247 Antisense
ACATACATTTCATCTACTGTCTCCT 680 105 263 Antisense
TCATTCCGACTTTCTACTACGATCA 511 617 311 Antisense
TCGCCTCTCGTTGGATTTATGCATT 270 599 404 Antisense
Sequence Source Affymetrix Proprietary Database