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[186633_s_at]

Description Y47G6A.25 /REP_DB=WormBase Gene ID /WP=CE22078 /TR=Q9N3R6 /GB=AAF60670.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 24.3
(-3)
A 		62.1
(0.9)
P 		63.8
(1.1)
P 		82.4
(3)
P 		58
B 25.7
(-3)
A 		81.7
(1.9)
P 		93.9
(3)
P 		85
(2.2)
P 		68
C 36.5
(-3)
A 		95.1
(0.1)
P 		67.1
(-1.4)
P 		148.3
(3)
P 		112
avr 28.8
(-3) 		79.6
(1) 		74.9
(0.6) 		105.2
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 31.1
(-3)
A 		70.8
(-2.4)
P 		95.1
(-2)
P 		182.5
(-0.6)
P 		256
(0.6)
P 		408.2
(3)
P 		377
B 30.6
(-3)
P 		52.9
(-2.7)
P 		98.9
(-2)
P 		110
(-1.8)
P 		255.5
(0.3)
P 		442.6
(3)
P 		412
C 19.1
(-3)
A 		55.7
(-2.5)
P 		76.3
(-2.2)
P 		131.1
(-1.4)
P 		248.2
(0.2)
P 		445.2
(3)
P 		426
avr 26.9
(-3) 		59.8
(-2.5) 		90.1
(-2.1) 		141.2
(-1.3) 		253.2
(0.4) 		432
(3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 8.9
(-3)
A 		13.5
(0.5)
P 		16.7
(3)
P 		12.1
(-0.5)
P 		8
B 8.2
(-3)
A 		20.2
(2.3)
P 		21.8
(3)
P 		18.1
(1.4)
P 		14
C 12.1
(-3)
A 		27.3
(3)
P 		23.4
(1.5)
P 		25
(2.1)
P 		15
avr 9.7
(-3) 		20.3
(2.8) 		20.6
(3) 		18.4
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 5.7
(-3)
A 		25.2
(-1.8)
P 		20.7
(-2)
P 		46.3
(-0.4)
P 		77.2
(1.6)
P 		99.4
(3)
P 		94
B 10.7
(-3)
P 		17.6
(-2.7)
P 		24
(-2.5)
P 		29.1
(-2.3)
P 		103.8
(0.6)
P 		165
(3)
P 		154
C 7.1
(-3)
A 		17
(-2.6)
P 		19.4
(-2.5)
P 		26.4
(-2.2)
P 		80.3
(0.1)
P 		149
(3)
P 		142
avr 7.8
(-3) 		19.9
(-2.4) 		21.4
(-2.4) 		33.9
(-1.8) 		87.1
(0.7) 		137.8
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186633_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.246
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.25 NCBI
Target Description Y47G6A.25 /REP_DB=WormBase Gene ID /WP=CE22078 /TR=Q9N3R6 /GB=AAF60670.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058784(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058784 NCBI Caenorhabditis elegans Y47G6A.25 (Y47G6A.25) mRNA, complete cds. 10/11 None
SNAP00000033997 ENSEMBL cdna:SNAP chromosome:CEL140:I:3606468:3619638:-1 11/11 None
GENEFINDER00000034076 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3606468:3608281:-1 11/11 None
Y47G6A.25 ENSEMBL cdna:known chromosome:CEL140:I:3606468:3608330:-1 gene:Y47G6A.25 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3606467-3608281(-) 94.97 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.25
Entrez Gene 171928 Entrez gene
SwissProt Q9N3R6 EMBL-EBI
WormBase CE34403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491185 Y47G6A.25 [Caenorhabditis elegans] gb|AAF60670.2| Hypothetical protein Y47G6A.25 [Caenorhabditis elegans] 0.0
blast NP_491188 Y47G6A.26 [Caenorhabditis elegans] gb|AAF60671.1| Hypothetical protein Y47G6A.26 [Caenorhabditis elegans] 1.0E-105
blast CAE60954 Hypothetical protein CBG04682 [Caenorhabditis briggsae] 3.0E-85
blast CAE60954 Hypothetical protein CBG04682 [Caenorhabditis briggsae] 1.0E-83
blast CAE60954 Hypothetical protein CBG04682 [Caenorhabditis briggsae] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:186633_S_AT
gattcttttttccttatcacagtacttgttaaacgaaacgaaacgtcctcaaactgctct
tttctcgttctcttcaaaaccgaaacttcgtggattctgtatcatggtggcgtatgagag
tggtccgttctgggagtacggatttcgtaatggaacctctgaaaaatctctttttaaaag
atttttgggattaaaatttcgaaaaaattggacaatttctccaatttttgaaaacgatga
aacatcaatcaccctgattcaactcaaagcatctctgggaaaatgtctctggaaaaccct
gaaatttgtaaatcagtcaggtgaacattctagaccgcttcccgacgactcatacgagca
aattgcaccgatagaacggaagcagctgaaacgaagattgtctcgaatcgaacggatcgc
ttcttcagttgaagaaaaaagagcacaatttgaggctttcgccagggaatatgacgcttt
ggatgctcgagacgccttcatgaagttcacttccacgtggcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTTTTTTCCTTATCACAGTAC 382 431 861 Antisense
AAACGAAACGTCCTCAAACTGCTCT 55 125 896 Antisense
GGTGGCGTATGAGAGTGGTCCGTTC 626 497 966 Antisense
AATCACCCTGATTCAACTCAAAGCA 155 171 1107 Antisense
CAGGTGAACATTCTAGACCGCTTCC 245 209 1178 Antisense
CTTCCCGACGACTCATACGAGCAAA 137 217 1198 Antisense
TCGAACGGATCGCTTCTTCAGTTGA 74 599 1268 Antisense
GGCTTTCGCCAGGGAATATGACGCT 530 537 1314 Antisense
TATGACGCTTTGGATGCTCGAGACG 272 655 1330 Antisense
TGCTCGAGACGCCTTCATGAAGTTC 285 581 1344 Antisense
TGAAGTTCACTTCCACGTGGCAAAC 376 575 1361 Antisense
Sequence Source Affymetrix Proprietary Database