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[186632_at]

Description Y102A5C.25 /REP_DB=WormBase Gene ID /WP=CE20397 /TR=Q9XX69 /GB=CAA20966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 27.2
(-2.1)
A 		14.3
(-3)
A 		34.9
(-1.6)
A 		101.8
(3)
A 		88
B 18.6
(-1.7)
A 		44.8
(3)
A 		11.3
(-3)
A 		38.5
(1.9)
A 		34
C 20.3
(1.9)
A 		20.3
(1.9)
A 		24
(3)
A 		4.6
(-3)
A 		19
avr 22
(-3) 		26.5
(-2) 		23.4
(-2.7) 		48.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 34.7
(3)
A 		22.2
(-0.2)
A 		34.1
(2.8)
A 		17.5
(-1.4)
A 		23.8
(0.2)
A 		11.4
(-3)
A 		23
B 4.5
(-2.4)
A 		8.3
(-1.7)
A 		35.3
(3)
A 		2.5
(-2.7)
A 		16.1
(-0.3)
A 		0.9
(-3)
A 		34
C 17.6
(1.6)
A 		20.7
(2.6)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		22.1
(3)
A 		9.1
(-1.1)
A 		19
avr 18.9
(1.1) 		17.1
(0.5) 		24.2
(3) 		7.6
(-2.8) 		20.7
(1.8) 		7.1
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.9
(0.5)
A 		3.1
(-3)
A 		9.1
(0.1)
A 		14.9
(3)
A 		12
B 5.9
(-0.7)
A 		11.1
(3)
A 		2.6
(-3)
A 		8.2
(1)
A 		9
C 6.7
(1.7)
A 		5.9
(1)
A 		8.4
(3)
A 		0.8
(-3)
A 		8
avr 7.5
(0.7) 		6.7
(-3) 		6.7
(-3) 		8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.4
(1.2)
A 		7.9
(3)
A 		7.4
(2.4)
A 		4.4
(-1.1)
A 		7.2
(2.2)
A 		2.8
(-3)
A 		5
B 1.6
(-2.1)
A 		2.7
(-1.3)
A 		8.6
(3)
A 		0.7
(-2.7)
A 		6.6
(1.6)
A 		0.3
(-3)
A 		8
C 6.5
(2.4)
A 		6.3
(2.3)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		7.1
(3)
A 		3
(-0.8)
A 		7
avr 4.8
(0.4) 		5.6
(1.4) 		5.6
(1.4) 		1.9
(-3) 		7
(3) 		2
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13513
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.25 NCBI
Target Description Y102A5C.25 /REP_DB=WormBase Gene ID /WP=CE20397 /TR=Q9XX69 /GB=CAA20966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074895 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-54) (srz-54) mRNA, complete cds. 11/11 None
Y102A5C.25 ENSEMBL cdna:known chromosome:CEL140:V:16983246:16984458:1 gene:Y102A5C.25 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003172 6/11 Cross Hyb Matching Probes None
T27C5.11 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16983245-16984458(+) 100.0 100.0
chrV:16986621-17408395(+) 92.89 92.89
Public Domain and Genome References
Gene Title
Gene Symbol srz-54
Ensembl Y102A5C.25
Entrez Gene 190848 Entrez gene
SwissProt Q9XX69 EMBL-EBI
WormBase CE20397 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20966 Hypothetical protein Y102A5C.25 [Caenorhabditis elegans] ref|NP_507296.1| Serpentine Receptor, class Z family member (srz-54) [Caenorhabditis elegans] 1.0E-173
blast CAA20964 Hypothetical protein Y102A5C.23 [Caenorhabditis elegans] ref|NP_507294.1| Serpentine Receptor, class Z family member (srz-53) [Caenorhabditis elegans] 1.0E-100
blast T26365 hypothetical protein Y102A5C.26 - Caenorhabditis elegans 1.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.3E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507296.1 6 20-42,70-92,99-121,181-203,224-246,256-278
Y102A5C.25 6 20-42,70-92,99-121,181-203,224-246,256-278
Sequence
Target Sequence 
>C. ELEGANS:186632_AT
cacgtgctactgtttgtactctcagttgaacggggttctctctacttttttccatccagc
gaaaaactattcaaatcttcgcaaaatataatcaaatacttgtactttttgataattgta
aaagaagtttcatgtgacatgttctcagcttggaagtatcagactgttcaaaatgtatac
tggattaatttgttcctttgcataacgtgctctatcaatgatgttcttgtatttatttcg
gctattttatatattccgattgttataagtattcgaaagtttgtaaatttacagtcagct
caaaattccaagccgcataaatatattttcttacaaacaatggtggttttcacatttaaa
tcgattcaagttctcgtataccttatgacaaaccatactggtatttccttaactagttta
tttatttgtgctataagaatgtcagactatatcactacgccgttaatagtccaactgtcc
tacctgtcatgcaataaaaggaacatgaaacttttgctctcctcgatgagtgctcggaag
ttattgtcctgttcagaacgggtgccaccgtgttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTGCTACTGTTTGTACTCTCAG 560 199 361 Antisense
GTACTCTCAGTTGAACGGGGTTCTC 561 457 376 Antisense
TCATGTGACATGTTCTCAGCTTGGA 360 621 490 Antisense
ATACTGGATTAATTTGTTCCTTTGC 668 23 537 Antisense
GTTCCTTTGCATAACGTGCTCTATC 391 441 552 Antisense
GATGTTCTTGTATTTATTTCGGCTA 84 411 580 Antisense
TCAGACTATATCACTACGCCGTTAA 641 623 802 Antisense
TTAATAGTCCAACTGTCCTACCTGT 37 683 823 Antisense
GTGCTCGGAAGTTATTGTCCTGTTC 683 477 890 Antisense
TGTCCTGTTCAGAACGGGTGCCACC 578 557 905 Antisense
TCAGAACGGGTGCCACCGTGTTGCC 154 623 913 Antisense
Sequence Source Affymetrix Proprietary Database