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[186631_s_at]

Description Y76B12C.4 /REP_DB=WormBase Gene ID /WP=CE23061 /TR=Q9N4C7 /GB=AAF36065.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 4.2
(-3)
A 		8.7
(-1.2)
A 		13.3
(0.7)
A 		18.8
(3)
A 		15
B 9.6
(-3)
A 		19.2
(-0.4)
A 		10.2
(-2.8)
A 		31.5
(3)
A 		22
C 4.9
(-3)
A 		13.4
(0.9)
A 		9.8
(-0.8)
A 		18
(3)
A 		13
avr 6.2
(-3) 		13.8
(-0.3) 		11.1
(-1.2) 		22.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 45.9
(3)
A 		11.4
(-2.1)
A 		5
(-3)
A 		6.8
(-2.7)
A 		8.5
(-2.5)
A 		17.9
(-1.1)
A 		41
B 5.8
(-3)
A 		8.7
(-2.6)
A 		11.1
(-2.3)
A 		26.4
(-0.2)
A 		9.4
(-2.5)
A 		49.3
(3)
A 		44
C 16.9
(-0.8)
A 		13.9
(-1.7)
A 		20.9
(0.4)
A 		29.6
(3)
A 		9.6
(-3)
A 		25.7
(1.8)
A 		20
avr 22.9
(0.8) 		11.3
(-2.4) 		12.3
(-2.1) 		20.9
(0.2) 		9.2
(-3) 		31
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.5
(-3)
A 		1.9
(-1.8)
A 		3.5
(3)
A 		2.7
(0.6)
A 		2
B 3.1
(-2)
A 		4.7
(0.2)
A 		2.4
(-3)
A 		6.7
(3)
A 		4
C 1.6
(-3)
A 		3.9
(3)
A 		3.4
(1.7)
A 		3
(0.7)
A 		2
avr 2.1
(-3) 		3.5
(1.2) 		3.1
(0) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.5
(3)
A 		4.1
(-0.6)
A 		1.1
(-3)
A 		1.7
(-2.5)
A 		2.6
(-1.8)
A 		4.4
(-0.3)
A 		7
B 2
(-3)
A 		2.9
(-2.7)
A 		2.7
(-2.7)
A 		7
(-1.2)
A 		3.8
(-2.3)
A 		18.4
(3)
A 		16
C 6.3
(0.5)
A 		4.3
(-1.7)
A 		5.3
(-0.6)
A 		5.9
(0.1)
A 		3.1
(-3)
A 		8.6
(3)
A 		6
avr 5.6
(-0.9) 		3.8
(-2.4) 		3
(-3) 		4.9
(-1.5) 		3.2
(-2.8) 		10.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186631_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10795
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.4 NCBI
Target Description Y76B12C.4 /REP_DB=WormBase Gene ID /WP=CE23061 /TR=Q9N4C7 /GB=AAF36065.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067750 NCBI Caenorhabditis elegans Y76B12C.4 (Y76B12C.4) mRNA, complete cds. 11/11 None
GENEFINDER00000007767 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1970769:1972370:-1 11/11 None
Y76B12C.4 ENSEMBL cdna:known chromosome:CEL140:IV:1970769:1972370:-1 gene:Y76B12C.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007749 5/11 Cross Hyb Matching Probes None
SNAP00000007751 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1970774-1972376(-) 83.27 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.4
Entrez Gene 176998 Entrez gene
SwissProt Q9N4C7 EMBL-EBI
WormBase CE23061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36065 Hypothetical protein Y76B12C.4 [Caenorhabditis elegans] ref|NP_500151.1| Y76B12C.4 [Caenorhabditis elegans] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186631_S_AT
aaaaaagtgccctctaagccacgtgaagggcccaagttgatcgacgaatttgaggaaaag
gaatcggagaaagaggcggcggaaaaggagaaggaaaaagagaaggaaaaagagaaaacc
catgagaaaaacgaggcggataaggaggaaaaagaggcagaaaaggaagaggaaaaggag
gaaaaaccaccgaaggaagtcactgaggagaaggaaaaagagaaggaaagagagaagact
aagacgaaggatgaactcgaagaggcgccaagggagaaggaaacgatggaaaagaagcaa
aaatcaaaggacgaagacgaaggggacctatcgaaggaggaaattttgaaaattaagaaa
gcgttgaaaaaggagaaaaagctgagggatcgagagcgattgaaaacggagaaaatcgat
aaatcgacggaaacgaagaactcgacgactcccagcacggaaaaggagaaaagttcgatg
aaaaagacgaaaaaggaggctgccgtggccaccggcacctccggcagcgccaagaaaaag
gtgagaccaccggccccccctccgccgccgacaaagcgaaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAAGTGCCCTCTAAGCCACGTG 397 1 142 Antisense
CCTCTAAGCCACGTGAAGGGCCCAA 278 265 152 Antisense
GAAGGGCCCAAGTTGATCGACGAAT 69 335 166 Antisense
AACCACCGAAGGAAGTCACTGAGGA 543 145 326 Antisense
GGATGAACTCGAAGAGGCGCCAAGG 287 513 390 Antisense
GACGAAGGGGACCTATCGAAGGAGG 46 375 457 Antisense
GAAACGAAGAACTCGACGACTCCCA 601 351 571 Antisense
CGACGACTCCCAGCACGGAAAAGGA 615 251 584 Antisense
GAAAAAGGAGGCTGCCGTGGCCACC 157 353 630 Antisense
CACCTCCGGCAGCGCCAAGAAAAAG 371 201 657 Antisense
CTCCGCCGCCGACAAAGCGAAAGCC 193 233 701 Antisense
Sequence Source Affymetrix Proprietary Database