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[186630_at]

Description F45C12.11 /REP_DB=WormBase Gene ID /WP=CE10456 /TR=O16736 /GB=AAB66200.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 11      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 13.9
(-2.3)
A 		13.2
(-2.3)
A 		6.6
(-3)
A 		66.3
(3)
A 		60
B 9.1
(-3)
A 		34.3
(3)
A 		9.1
(-3)
A 		21.4
(-0.1)
A 		25
C 26.5
(-2.1)
A 		11.3
(-2.8)
A 		6.7
(-3)
A 		131.9
(3)
A 		125
avr 16.5
(-2.2) 		19.6
(-1.9) 		7.5
(-3) 		73.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 45
(0.7)
A 		15.1
(-2.1)
A 		70.1
(3)
A 		5.6
(-3)
A 		14.7
(-2.2)
A 		31.8
(-0.6)
A 		65
B 3.8
(-3)
A 		18.8
(-1.1)
A 		20
(-0.9)
A 		50
(3)
A 		21.4
(-0.7)
A 		45.8
(2.5)
A 		46
C 39.6
(0.5)
A 		47.5
(1.7)
A 		19.8
(-2.5)
A 		27.9
(-1.2)
A 		16.4
(-3)
A 		55.8
(3)
A 		39
avr 29.5
(-0.3) 		27.1
(-0.9) 		36.6
(1.2) 		27.8
(-0.7) 		17.5
(-3) 		44.5
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 5.1
(-0.5)
A 		2.9
(-2.1)
A 		1.7
(-3)
A 		9.7
(3)
A 		8
B 2.9
(-2.3)
A 		8.5
(3)
A 		2.1
(-3)
A 		4.6
(-0.7)
A 		6
C 8.8
(-1)
A 		3.3
(-2.7)
A 		2.3
(-3)
A 		22.2
(3)
A 		20
avr 5.6
(-0.9) 		4.9
(-1.3) 		2
(-3) 		12.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(-0)
A 		5.4
(-1.3)
A 		15.3
(3)
A 		1.4
(-3)
A 		4.4
(-1.7)
A 		7.7
(-0.3)
A 		14
B 1.3
(-3)
A 		6.3
(-1.1)
A 		4.9
(-1.6)
A 		13.3
(1.6)
A 		8.7
(-0.2)
A 		17.1
(3)
A 		16
C 14.7
(1.2)
A 		14.5
(1.2)
A 		5
(-3)
A 		5.6
(-2.7)
A 		5.3
(-2.9)
A 		18.7
(3)
A 		14
avr 8.1
(-1.6) 		8.7
(-1.1) 		8.4
(-1.4) 		6.8
(-2.5) 		6.1
(-3) 		14.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4866
Sequence Type Exemplar sequence
Representative Public ID F45C12.11 NCBI
Target Description F45C12.11 /REP_DB=WormBase Gene ID /WP=CE10456 /TR=O16736 /GB=AAB66200.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061648 NCBI Caenorhabditis elegans F45C12.11 (F45C12.11) mRNA, complete cds. 11/11 None
SNAP00000033183 ENSEMBL cdna:SNAP chromosome:CEL140:II:1704993:1706479:-1 11/11 None
GENEFINDER00000033206 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1704993:1706479:-1 11/11 None
F45C12.11 ENSEMBL cdna:known chromosome:CEL140:II:1705001:1706479:-1 gene:F45C12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1704999-1706478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-18
Ensembl F45C12.11
Entrez Gene 185773 Entrez gene
SwissProt O16736 EMBL-EBI
WormBase CE10456 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66200 Hypothetical protein F45C12.11 [Caenorhabditis elegans] ref|NP_494049.1| F45C12.11 [Caenorhabditis elegans] 1.0E-165
blast AAB66200 Hypothetical protein F45C12.11 [Caenorhabditis elegans] ref|NP_494049.1| F45C12.11 [Caenorhabditis elegans] 1.0E-152
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 9.0E-54
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 1.0E-52
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.4E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.6E-37
Sequence
Target Sequence 
>C. ELEGANS:186630_AT
aatcacccagcctcatcagtgaagtattgcggtcgaccataatgccttggggcagaatga
tgacaaattacgtagttgatgatgctctcatgattgaagtttttgtgacaatcaaatcca
tgactggattcgaaagaccgtataacctccgaagcttcgacgaatcaatggaagagtttt
ccgacgtggttcttctggttggggagaagaagttttatgttctcagaaaatacctcgctg
cccagtccaagtacttcaaggctcttcttcttggctccttcgaagaagggaagagctccg
aagtcaccctcactagcatcgatcctaatgactttcagttcttcctggaagttctctacg
gggattcagctattaatgatctaaccgtggagggcattcttcatattgcagacatgtatg
acacaccgatggtcgttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACCCAGCCTCATCAGTGAAGT 316 171 287 Antisense
GTATTGCGGTCGACCATAATGCCTT 194 451 310 Antisense
GAAAGACCGTATAACCTCCGAAGCT 359 359 418 Antisense
TCTCAGAAAATACCTCGCTGCCCAG 631 609 507 Antisense
GTACTTCAAGGCTCTTCTTCTTGGC 45 461 537 Antisense
AGGGAAGAGCTCCGAAGTCACCCTC 509 57 573 Antisense
CCCTCACTAGCATCGATCCTAATGA 38 255 593 Antisense
TCCTAATGACTTTCAGTTCTTCCTG 20 593 609 Antisense
AAGTTCTCTACGGGGATTCAGCTAT 159 157 635 Antisense
AACCGTGGAGGGCATTCTTCATATT 442 147 669 Antisense
GTATGACACACCGATGGTCGTTCGA 94 437 702 Antisense
Sequence Source Affymetrix Proprietary Database