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[186629_at]

Description F45C12.13 /REP_DB=WormBase Gene ID /WP=CE10460 /TR=O16742 /GB=AAB66211.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 47.2
(0)
A 		23.6
(-3)
A 		28.1
(-2.4)
A 		70.4
(3)
A 		47
B 23.4
(-3)
A 		66.5
(3)
A 		42.9
(-0.3)
A 		35.4
(-1.3)
A 		43
C 20.9
(-3)
A 		63.4
(1.3)
A 		51.9
(0.1)
A 		80
(3)
A 		59
avr 30.5
(-3) 		51.2
(1) 		41
(-1) 		61.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 98.6
(3)
A 		10.5
(-3)
A 		13
(-2.8)
A 		52.1
(-0.2)
A 		41.5
(-0.9)
A 		90.3
(2.4)
A 		88
B 64.2
(1.5)
A 		31.7
(-3)
A 		50.7
(-0.3)
A 		74.7
(3)
A 		41.9
(-1.6)
A 		48.9
(-0.6)
A 		43
C 46.5
(2.1)
A 		47.3
(2.2)
A 		53.3
(3)
A 		8.7
(-3)
A 		46.7
(2.1)
A 		51.6
(2.8)
P 		45
avr 69.8
(3) 		29.8
(-3) 		39
(-1.6) 		45.2
(-0.7) 		43.4
(-1) 		63.6
(2.1) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 17.2
(3)
A 		5.1
(-3)
A 		7.3
(-1.9)
A 		10.3
(-0.4)
A 		12
B 7.5
(-3)
A 		16.4
(3)
A 		9.9
(-1.4)
A 		7.5
(-3)
A 		9
C 6.9
(-3)
A 		18.2
(3)
A 		18.1
(2.9)
A 		13.5
(0.5)
A 		11
avr 10.5
(-2.8) 		13.2
(3) 		11.8
(0) 		10.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 18.2
(1.8)
A 		3.7
(-2.7)
A 		2.8
(-3)
A 		13.2
(0.3)
A 		12.5
(0)
A 		22
(3)
A 		19
B 22.4
(3)
A 		10.5
(-3)
A 		12.3
(-2.1)
A 		19.8
(1.7)
A 		17
(0.3)
A 		18.2
(0.9)
A 		12
C 17.2
(3)
A 		14.4
(1.9)
A 		13.6
(1.6)
A 		1.7
(-3)
A 		15.1
(2.2)
A 		17.3
(3)
P 		16
avr 19.3
(3) 		9.5
(-3) 		9.6
(-2.9) 		11.6
(-1.7) 		14.9
(0.3) 		19.2
(2.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4422
Sequence Type Exemplar sequence
Representative Public ID F45C12.13 NCBI
Target Description F45C12.13 /REP_DB=WormBase Gene ID /WP=CE10460 /TR=O16742 /GB=AAB66211.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061654 NCBI Caenorhabditis elegans F45C12.13 (F45C12.13) mRNA, complete cds. 11/11 None
F45C12.13 ENSEMBL cdna:known chromosome:CEL140:II:1718178:1719086:-1 gene:F45C12.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033190 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1718176-1719085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.13
Entrez Gene 185775 Entrez gene
SwissProt O16742 EMBL-EBI
WormBase CE10460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66211 Hypothetical protein F45C12.13 [Caenorhabditis elegans] ref|NP_494055.1| F45C12.13 [Caenorhabditis elegans] 1.0E-160
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 8.0E-38
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 8.0E-36
Sequence
Target Sequence 
>C. ELEGANS:186629_AT
ttaatactcctatcctttcaaacacaaaaacccttgccgagcttgtcaaaacttttgagc
cgacggagcatctcaagatacatcgatacccttttcaaacattaggcttcgctcaacttt
tccaattacgagaaattttaccggggaagtttcctatactttccttgaatatcaacatgc
cgttaaacggcctactattaacaagctcttcatccgttggcgttaataataatcgacttt
taacaagtaaagattttaatatattcttaaaacattggatcgccggattgaaaccagagc
ttgaatgtattagaattctagactaccgacttgattggaatgagcacactgttcttaaag
gaataccatacgaagttgcaccgatggaaacgaaaataaaatttcgtcgcaaggaagagc
ttcaattgggaggattcgattttacgatgagcagtggcgtcaaagcaacactacatttcc
actactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATACTCCTATCCTTTCAAACAC 328 683 368 Antisense
ACACAAAAACCCTTGCCGAGCTTGT 55 111 389 Antisense
GAGCCGACGGAGCATCTCAAGATAC 609 385 424 Antisense
GATACATCGATACCCTTTTCAAACA 126 423 444 Antisense
ACATTAGGCTTCGCTCAACTTTTCC 611 103 466 Antisense
GAAGTTTCCTATACTTTCCTTGAAT 318 337 513 Antisense
GGCCTACTATTAACAAGCTCTTCAT 382 543 556 Antisense
GCTCTTCATCCGTTGGCGTTAATAA 341 301 572 Antisense
AATTCTAGACTACCGACTTGATTGG 584 175 681 Antisense
GAATACCATACGAAGTTGCACCGAT 461 325 728 Antisense
AAGCAACACTACATTTCCACTACTG 547 151 830 Antisense
Sequence Source Affymetrix Proprietary Database