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[186627_at]

Description C40H1.3 /REP_DB=WormBase Gene ID /WP=CE00111 /TR=SW:Q03573 /GB=CAA79554.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 29.1
(-0.4)
A 		2.8
(-3)
A 		6.5
(-2.6)
A 		63.4
(3)
A 		61
B 25.9
(0.4)
A 		33.4
(3)
A 		22.5
(-0.8)
A 		16.3
(-3)
A 		17
C 7.9
(-3)
A 		9.3
(-2.8)
A 		14.9
(-1.8)
A 		42.9
(3)
A 		35
avr 21
(-1.5) 		15.2
(-2.9) 		14.6
(-3) 		40.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 33.1
(3)
A 		29.2
(2.2)
A 		26.7
(1.7)
A 		26.3
(1.6)
A 		32
(2.8)
A 		3.7
(-3)
A 		29
B 29.4
(3)
P 		23
(1.6)
A 		13.4
(-0.5)
A 		24
(1.8)
A 		3.3
(-2.6)
A 		1.6
(-3)
A 		28
C 14.7
(-1.1)
A 		42
(2.9)
P 		42.8
(3)
P 		22.7
(0.1)
A 		1.5
(-3)
A 		3
(-2.8)
A 		41
avr 25.7
(1.8) 		31.4
(3) 		27.6
(2.2) 		24.3
(1.5) 		12.3
(-1) 		2.8
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.6
(3)
A 		0.6
(-3)
A 		1.7
(-2.3)
A 		9.3
(2.2)
A 		10
B 8.3
(3)
A 		8.2
(2.9)
A 		5.2
(-0.9)
A 		3.5
(-3)
A 		5
C 2.6
(-3)
A 		2.7
(-2.9)
A 		5.2
(0.4)
A 		7.2
(3)
A 		5
avr 7.2
(3) 		3.8
(-3) 		4
(-2.6) 		6.7
(2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.1
(0.3)
A 		10.4
(3)
A 		5.8
(0.1)
A 		6.7
(0.7)
A 		9.6
(2.5)
A 		0.9
(-3)
A 		10
B 10.2
(3)
P 		7.7
(1.4)
A 		3.3
(-1.3)
A 		6.4
(0.6)
A 		1.4
(-2.5)
A 		0.6
(-3)
A 		10
C 5.4
(-0.6)
A 		12.8
(3)
P 		10.9
(2.1)
P 		4.6
(-1)
A 		0.5
(-3)
A 		1
(-2.8)
A 		12
avr 7.2
(1) 		10.3
(3) 		6.7
(0.7) 		5.9
(0.2) 		3.8
(-1.1) 		0.8
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6952
Sequence Type Exemplar sequence
Representative Public ID C40H1.3 NCBI
Target Description C40H1.3 /REP_DB=WormBase Gene ID /WP=CE00111 /TR=SW:Q03573 /GB=CAA79554.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066652 NCBI Caenorhabditis elegans C40H1.3 (C40H1.3) mRNA, complete cds. 11/11 None
SNAP00000000786 ENSEMBL cdna:SNAP chromosome:CEL140:III:9327205:9329264:-1 11/11 None
GENEFINDER00000000791 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9327205:9329264:-1 11/11 None
C40H1.3 ENSEMBL cdna:known chromosome:CEL140:III:9327205:9329264:-1 gene:C40H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9327200-9329260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40H1.3
Entrez Gene 183366 Entrez gene
SwissProt Q03573 EMBL-EBI
WormBase CE00111 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79554 Hypothetical protein C40H1.3 [Caenorhabditis elegans] ref|NP_499053.1| C40H1.3 [Caenorhabditis elegans] sp|Q03573|YLF3_CAEEL Hypothetical protein C40H1.3 in chromosome III 0.0
blast CAE65238 Hypothetical protein CBG10121 [Caenorhabditis briggsae] 0.0
blast XP_792770 PREDICTED: similar to Protein KIAA0562 [Strongylocentrotus purpuratus] 7.0E-12
Sequence
Target Sequence 
>C. ELEGANS:186627_AT
gagtcaggtcttggtagagcaggtggaatggaaaaacactttgctaaatattgcaaagtt
atgacaagttgcaagtattgtatgaagttgacaatggtatctcaactcactgatcactta
atatatcgttgtgaatttctccaagacacgatggaagcttgtaatgactgtggattagca
attgagaaagaagatcaaaaacgtggaggaagtcatccaatgtgtcgtggaagacgtccc
ccgacaggagcacaatggtgtcctttgtgcacaattgcagtggaggataatgaagagaat
tggagagaacatttattaaataattgttataataatcaacggagagatggtccagaaaaa
gatccatgggagatgaaacaagagcaagaagatattttacttggagcaaaagaaaagaag
aagcgtgaaatggaggaagaagagcgactgaaaaaagaagcggaaataagacggcaacag
caacaagttgttgtgaataatacaggatatcctggaaaaatgatcgacgccgataagttg
gtggtggctcttcaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCAGGTCTTGGTAGAGCAGGTG 546 399 907 Antisense
GGTATCTCAACTCACTGATCACTTA 388 505 1002 Antisense
TATCGTTGTGAATTTCTCCAAGACA 290 657 1030 Antisense
GATGGAAGCTTGTAATGACTGTGGA 419 407 1056 Antisense
GGAGGAAGTCATCCAATGTGTCGTG 658 515 1111 Antisense
CAATGTGTCGTGGAAGACGTCCCCC 253 183 1124 Antisense
GACAGGAGCACAATGGTGTCCTTTG 192 369 1149 Antisense
TGGTGTCCTTTGTGCACAATTGCAG 293 553 1162 Antisense
TCCTGGAAAAATGATCGACGCCGAT 582 593 1416 Antisense
GATCGACGCCGATAAGTTGGTGGTG 336 401 1428 Antisense
TAAGTTGGTGGTGGCTCTTCAAGAG 62 637 1440 Antisense
Sequence Source Affymetrix Proprietary Database