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[186626_s_at]

Description Y77E11A.1 /REP_DB=WormBase Gene ID /WP=CE25610 /TR=Q9N4A5 /GB=AAF36071.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 74      6grp_total > 38      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 928.6
(3)
P 		719.3
(-2)
P 		699.9
(-2.5)
P 		677.6
(-3)
P 		251
B 968.8
(3)
P 		643.5
(-1.5)
P 		619.6
(-1.8)
P 		536.6
(-3)
P 		432
C 891.3
(3)
P 		808.9
(1.9)
P 		721.2
(0.6)
P 		458.2
(-3)
P 		433
avr 929.6
(3) 		723.9
(-0.3) 		680.2
(-1) 		557.5
(-3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 781
(3)
P 		770.2
(2.7)
P 		607.5
(-1.2)
P 		648.7
(-0.2)
P 		534.7
(-3)
P 		767.5
(2.7)
P 		246
B 711
(1.8)
P 		698.8
(1.5)
P 		628.3
(-0.3)
P 		524.5
(-3)
P 		755.3
(3)
P 		688.5
(1.3)
P 		231
C 942.7
(3)
P 		616.8
(-2.1)
P 		651.7
(-1.5)
P 		558.8
(-3)
P 		696
(-0.9)
P 		845.3
(1.5)
P 		384
avr 811.6
(3) 		695.3
(0) 		629.2
(-1.7) 		577.3
(-3) 		662
(-0.8) 		767.1
(1.9) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 338.1
(3)
P 		156.1
(-1.6)
P 		183
(-0.9)
P 		99.2
(-3)
P 		239
B 308.9
(3)
P 		158.9
(-1.6)
P 		143.6
(-2.1)
P 		114.3
(-3)
P 		195
C 295
(3)
P 		232.6
(1.3)
P 		251.4
(1.8)
P 		77.3
(-3)
P 		218
avr 314
(3) 		182.5
(-0.6) 		192.7
(-0.4) 		96.9
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 144
(-2.5)
P 		273.9
(3)
P 		132.3
(-3)
P 		164.5
(-1.6)
P 		161.3
(-1.8)
P 		186.9
(-0.7)
P 		142
B 247.4
(0.9)
P 		232.6
(0.3)
P 		152.6
(-2.5)
P 		138.9
(-3)
P 		306.9
(3)
P 		256.7
(1.2)
P 		168
C 349.4
(3)
P 		188.2
(-1.1)
P 		165.9
(-1.6)
P 		112.4
(-3)
P 		225.2
(-0.1)
P 		283
(1.3)
P 		237
avr 246.9
(3) 		231.6
(2.2) 		150.3
(-2.4) 		138.6
(-3) 		231.1
(2.1) 		242.2
(2.7) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186626_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10646
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.1 NCBI
Target Description Y77E11A.1 /REP_DB=WormBase Gene ID /WP=CE25610 /TR=Q9N4A5 /GB=AAF36071.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067687 NCBI Caenorhabditis elegans Y77E11A.1 (Y77E11A.1) mRNA, complete cds. 11/11 None
SNAP00000027317 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1505287:1509674:1 11/11 None
GENEFINDER00000027325 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1505101:1509674:1 11/11 None
Y77E11A.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:1497629:1509956:1 gene:Y77E11A.1 11/11 None
Y77E11A.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:1499859:1510013:1 gene:Y77E11A.1 11/11 None
Y77E11A.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:1499861:1510013:1 gene:Y77E11A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1499880-1509680(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y77E11A.1
Entrez Gene 176958 Entrez gene
SwissProt Q9N4A5 EMBL-EBI
WormBase CE25610 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4396 hexokinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36071 Hypothetical protein Y77E11A.1 [Caenorhabditis elegans] ref|NP_500088.1| Y77E11A.1 [Caenorhabditis elegans] 0.0
blast CAE68219 Hypothetical protein CBG13890 [Caenorhabditis briggsae] 0.0
blast AAF36071 Hypothetical protein Y77E11A.1 [Caenorhabditis elegans] ref|NP_500088.1| Y77E11A.1 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR001312 EMBL-EBI Hexokinase 3.0E-61
Pfam IPR001312 EMBL-EBI Hexokinase 1.4E-48
Pfam IPR001312 EMBL-EBI Hexokinase 1.5E-41
Pfam IPR001312 EMBL-EBI Hexokinase 1.5E-41
Sequence
Target Sequence 
>C. ELEGANS:186626_S_AT
tgcggagccctgtacattggtgaagttgtgcgacgagtactttctcaactggttttggat
agagttctattcgaaggacaatcgtgtgaaaaattggacgaagacgagtcattcccgaca
aaatatatttcagagattttgggtgaagaagaaggtgtattcaaggcgtgtcgacgtatt
tgtgaagagcttgaagttgaaatgcacggaactggagattatattataatacgagaagtg
tgtgacgtcatctctagacgaggagccagtattgttgccgcagccatcagcgctctgctc
cgtcacctggaactgtcttccgtgaaaattggtgtaggtggcgctcttattcaattccat
ccaacctatcatcaaatgctaaaggagaagctcgaagagctcacgccgattaccatgaaa
ttcgaactcgtacctgccgacgaaggaagttgtcaaggagccgctctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGAGCCCTGTACATTGGTGAAG 611 583 868 Antisense
GTGCGACGAGTACTTTCTCAACTGG 538 477 895 Antisense
GGACGAAGACGAGTCATTCCCGACA 166 523 963 Antisense
AGGTGTATTCAAGGCGTGTCGACGT 700 57 1020 Antisense
CGAGGAGCCAGTATTGTTGCCGCAG 317 249 1126 Antisense
TCACCTGGAACTGTCTTCCGTGAAA 632 615 1170 Antisense
GTAGGTGGCGCTCTTATTCAATTCC 64 457 1201 Antisense
AATTCCATCCAACCTATCATCAAAT 162 177 1220 Antisense
AAGCTCGAAGAGCTCACGCCGATTA 293 149 1255 Antisense
AACTCGTACCTGCCGACGAAGGAAG 291 137 1292 Antisense
GGAAGTTGTCAAGGAGCCGCTCTAA 364 531 1312 Antisense
Sequence Source Affymetrix Proprietary Database