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[186625_at]

Description F45C12.12 /REP_DB=WormBase Gene ID /WP=CE10458 /TR=O16740 /GB=AAB66210.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 38      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.7
(-2)
A 		9.3
(3)
A 		3.8
(-3)
A 		4.4
(-2.3)
A 		6
B 3
(-3)
A 		32.3
(3)
A 		5.8
(-2.4)
A 		8
(-2)
A 		29
C 54.8
(3)
A 		5
(-3)
A 		27
(-0.3)
A 		30.8
(0.1)
A 		50
avr 20.8
(3) 		15.5
(-0.7) 		12.2
(-3) 		14.4
(-1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 5.4
(-2.9)
A 		7.5
(-2.7)
A 		4.6
(-3)
A 		4.5
(-3)
A 		57.4
(3)
A 		48.3
(2)
A 		53
B 3
(-3)
A 		10
(-1.8)
A 		6
(-2.5)
A 		7.6
(-2.2)
A 		26.2
(1)
A 		37.5
(3)
A 		35
C 11.6
(-2.2)
A 		24.9
(-0.6)
A 		9.6
(-2.4)
A 		4.5
(-3)
A 		55.5
(3)
A 		42.1
(1.4)
A 		51
avr 6.7
(-2.8) 		14.1
(-1.7) 		6.7
(-2.8) 		5.5
(-3) 		46.4
(3) 		42.6
(2.4) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.7
(1.7)
A 		2
(3)
A 		1
(-1.3)
A 		0.6
(-3)
A 		1
B 0.9
(-3)
A 		8
(3)
A 		1.3
(-2.7)
A 		1.7
(-2.3)
A 		7
C 18.1
(3)
A 		1.4
(-3)
A 		9.4
(-0.1)
A 		5.2
(-1.6)
A 		17
avr 6.9
(3) 		3.8
(-1.2) 		3.9
(-1.1) 		2.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1
(-3)
A 		2.7
(-2.4)
A 		1
(-3)
A 		1.1
(-3)
A 		17.3
(3)
A 		11.8
(1)
A 		16
B 1.1
(-3)
A 		3.3
(-2)
A 		1.5
(-2.8)
A 		2
(-2.6)
A 		10.7
(1.5)
A 		14
(3)
A 		13
C 4.3
(-1.8)
A 		7.6
(-0.6)
A 		2.4
(-2.5)
A 		0.9
(-3)
A 		18
(3)
A 		14.1
(1.6)
A 		17
avr 2.1
(-2.7) 		4.5
(-1.6) 		1.6
(-2.9) 		1.3
(-3) 		15.3
(3) 		13.3
(2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4046
Sequence Type Exemplar sequence
Representative Public ID F45C12.12 NCBI
Target Description F45C12.12 /REP_DB=WormBase Gene ID /WP=CE10458 /TR=O16740 /GB=AAB66210.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061652 NCBI Caenorhabditis elegans F45C12.12 (F45C12.12) mRNA, complete cds. 11/11 None
SNAP00000033188 ENSEMBL cdna:SNAP chromosome:CEL140:II:1713261:1714311:1 11/11 None
GENEFINDER00000033209 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1713261:1716436:1 11/11 None
F45C12.12 ENSEMBL cdna:known chromosome:CEL140:II:1713261:1714230:1 gene:F45C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1713259-1714229(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.12
Entrez Gene 185774 Entrez gene
SwissProt O16740 EMBL-EBI
WormBase CE10458 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66206 Hypothetical protein F45C12.7 [Caenorhabditis elegans] ref|NP_494054.1| F45C12.7 [Caenorhabditis elegans] 0.0
blast AAB66210 Hypothetical protein F45C12.12 [Caenorhabditis elegans] ref|NP_494053.1| F45C12.12 [Caenorhabditis elegans] 1.0E-154
blast AAB66210 Hypothetical protein F45C12.12 [Caenorhabditis elegans] ref|NP_494053.1| F45C12.12 [Caenorhabditis elegans] 1.0E-150
blast H88094 protein F39E9.2 [imported] - Caenorhabditis elegans 3.0E-77
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 1.0E-38
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 9.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.5E-29
Sequence
Target Sequence 
>C. ELEGANS:186625_AT
atgagcaccgtgtcaatttttccgtcgaaaataaaaatacacaaagtcttgctgaaactc
gagcaattttggagctcattttgacaccaatccgggaaaaattttcgtatcgggaaatgt
tcatgccatcccagaaaacagatgcgattttgatgattggtggcgaaaaacttcatgtta
ataaagcgttcctctccttccattcggacttcttccacgagttgttctcggcgagctcca
cagaaagcgagattccagagatcccaattcgtgacgtctccgctgaggatatgggtcttc
ttctcagcacaatctacccggatctagtgtttcccacggacaagaccgccgcgaagcttc
tgacgctcgccaatcgattccaaatgcgggcggtcaccgcgcaagtggaacaccatctgc
tctggcattcggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCACCGTGTCAATTTTTCCGT 156 45 278 Antisense
TGGAGCTCATTTTGACACCAATCCG 169 549 347 Antisense
GAAATGTTCATGCCATCCCAGAAAA 306 361 391 Antisense
TCCACGAGTTGTTCTCGGCGAGCTC 303 589 491 Antisense
TCCAGAGATCCCAATTCGTGACGTC 87 591 531 Antisense
GACGTCTCCGCTGAGGATATGGGTC 449 377 550 Antisense
CAATCTACCCGGATCTAGTGTTTCC 46 173 587 Antisense
TAGTGTTTCCCACGGACAAGACCGC 324 645 602 Antisense
TCGATTCCAAATGCGGGCGGTCACC 27 605 651 Antisense
ACCGCGCAAGTGGAACACCATCTGC 511 87 673 Antisense
ACCATCTGCTCTGGCATTCGGATAT 45 87 689 Antisense
Sequence Source Affymetrix Proprietary Database