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[186624_at]

Description Y39F10B.1 /REP_DB=WormBase Gene ID /WP=CE24242 /TR=Q9N510 /GB=AAF60535.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 12.6
(-3)
A 		14.3
(-1.3)
A 		14.6
(-1)
A 		18.5
(3)
A 		6
B 18.3
(-2.3)
A 		10
(-3)
A 		25.7
(-1.6)
A 		77.2
(3)
A 		67
C 18.6
(-3)
A 		21.4
(-2.8)
A 		66.5
(0.4)
A 		102.7
(3)
A 		84
avr 16.5
(-2.8) 		15.2
(-3) 		35.6
(-0.6) 		66.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 22.8
(-2.4)
A 		12.9
(-2.9)
A 		15
(-2.8)
A 		10
(-3)
A 		28.4
(-2.1)
A 		138.9
(3)
A 		129
B 21
(3)
A 		18.8
(1.7)
A 		16.7
(0.4)
A 		12.1
(-2.4)
A 		11.1
(-3)
A 		14.7
(-0.8)
A 		10
C 10.4
(-2.7)
A 		14.3
(-2.3)
A 		21.8
(-1.4)
A 		7.9
(-3)
A 		59.5
(3)
A 		18.1
(-1.8)
A 		52
avr 18.1
(-2) 		15.3
(-2.3) 		17.8
(-2) 		10
(-3) 		33
(-0.1) 		57.2
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.6
(3)
A 		3.1
(-1.7)
A 		3.8
(0.5)
A 		2.7
(-3)
A 		2
B 5.8
(-1.6)
A 		2.5
(-3)
A 		6
(-1.5)
A 		16.5
(3)
A 		14
C 6.2
(-3)
A 		6.1
(-3)
A 		23.2
(3)
A 		17.3
(0.9)
A 		17
avr 5.5
(-1.8) 		3.9
(-3) 		11
(2.1) 		12.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		4.6
(-2.6)
A 		3.3
(-2.8)
A 		2.5
(-3)
A 		8.6
(-1.8)
A 		33.8
(3)
A 		31
B 7.3
(3)
A 		6.3
(1.5)
A 		4.1
(-1.7)
A 		3.2
(-3)
A 		4.5
(-1.1)
A 		5.5
(0.4)
A 		4
C 3.8
(-2.3)
A 		4.3
(-2.1)
A 		5.6
(-1.6)
A 		1.6
(-3)
A 		19.3
(3)
A 		6.1
(-1.5)
A 		18
avr 5.1
(-1.7) 		5.1
(-1.7) 		4.3
(-2.1) 		2.4
(-3) 		10.8
(1) 		15.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4212
Sequence Type Exemplar sequence
Representative Public ID Y39F10B.1 NCBI
Target Description Y39F10B.1 /REP_DB=WormBase Gene ID /WP=CE24242 /TR=Q9N510 /GB=AAF60535.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061397(11), NM_182231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061397 NCBI Caenorhabditis elegans Y39F10B.1a (Y39F10B.1) mRNA, complete cds. 11/11 None
NM_182231 NCBI Caenorhabditis elegans Y39F10B.1b (Y39F10B.1) mRNA, complete cds. 11/11 None
SNAP00000036813 ENSEMBL cdna:SNAP chromosome:CEL140:II:729141:732071:1 10/11 None
Y39F10B.1a ENSEMBL cdna:known chromosome:CEL140:II:723794:732424:1 gene:Y39F10B.1 11/11 None
Y39F10B.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:723899:732202:1 gene:Y39F10B.1 11/11 None
Y39F10B.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:723901:732202:1 gene:Y39F10B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036816 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036819 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:723793-732202(+) 97.66 100.0
Public Domain and Genome References
Ensembl Y39F10B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60535 Hypothetical protein Y39F10B.1a [Caenorhabditis elegans] ref|NP_493798.1| Y39F10B.1a [Caenorhabditis elegans] 0.0
blast AAO38570 Hypothetical protein Y39F10B.1b [Caenorhabditis elegans] ref|NP_872031.1| Y39F10B.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 4.3E-13
Pfam IPR000008 EMBL-EBI C2 domain 4.3E-13
Sequence
Target Sequence 
>C. ELEGANS:186624_AT
aatccatttgccgattccatttcaccagaagctccacaagctcagccagttgcagccgcc
cgtcgccagagcacaaccacgccgactggaagatttggtggaattggagcaattaccgga
gcagccacgttgccccatgcgatgacgtcacctgtgatggctcacgacatgttccaccga
tcgggaagcattcgatctacggcctcaagcggatttggcggctctcagaagaatcaacga
aagatcattgatccgagcaactctgacgatctacttgcagttattgatagtctgaagttg
gagcttcaggttaaagattcgaggatgaaggatatgcagggctatatggatttgttgcca
aaaaatcgtgaaaagtgccaaaaaatcacttttttttcagatttcccgtgtgatggaacg
aaatccggaactgctggccgcccccgcaaccaatcagaagcccagaatgcgattcttcta
attttttccatatttgttcgatttttttttccaaattctctttgccccccgaaactcatt
cctccagcagctgacttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCATTTGCCGATTCCATTTCAC 369 167 985 Antisense
CCATTTCACCAGAAGCTCCACAAGC 71 271 1001 Antisense
CACAACCACGCCGACTGGAAGATTT 559 193 1056 Antisense
TGGAGCAATTACCGGAGCAGCCACG 392 549 1089 Antisense
GATGACGTCACCTGTGATGGCTCAC 363 411 1125 Antisense
GACATGTTCCACCGATCGGGAAGCA 577 369 1150 Antisense
TCGGGAAGCATTCGATCTACGGCCT 321 605 1165 Antisense
TCAAGCGGATTTGGCGGCTCTCAGA 469 631 1189 Antisense
CCGAGCAACTCTGACGATCTACTTG 670 263 1237 Antisense
CCCGCAACCAATCAGAAGCCCAGAA 412 259 1427 Antisense
CTCATTCCTCCAGCAGCTGACTTTA 581 229 1519 Antisense
Sequence Source Affymetrix Proprietary Database