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[186623_at]

Description C56C10.12 /REP_DB=WormBase Gene ID /WP=CE02566 /TR=Q18892 /GB=AAA68780.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 46      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 241.8
(3)
P 		165.9
(-0)
A 		91.5
(-3)
A 		138.6
(-1.1)
P 		150
B 257.4
(3)
P 		177.9
(-0.9)
A 		200.8
(0.2)
P 		134.1
(-3)
P 		123
C 240.7
(3)
P 		232.3
(2.4)
A 		153.8
(-3)
P 		191
(-0.4)
A 		87
avr 246.6
(3) 		192
(-0.3) 		148.7
(-3) 		154.6
(-2.6) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 205.3
(-0.8)
A 		299.8
(3)
P 		187.3
(-1.6)
P 		152.4
(-3)
A 		164.8
(-2.5)
A 		181.1
(-1.8)
A 		147
B 172.4
(-1.5)
P 		256
(3)
P 		185.6
(-0.8)
P 		157.4
(-2.3)
P 		145.3
(-3)
A 		171.4
(-1.6)
A 		111
C 214.4
(2.8)
P 		214.4
(2.8)
P 		213.4
(2.7)
M 		158.5
(-2.3)
M 		216.9
(3)
A 		150.9
(-3)
A 		66
avr 197.4
(-0.5) 		256.7
(3) 		195.4
(-0.7) 		156.1
(-3) 		175.7
(-1.8) 		167.8
(-2.3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 88
(3)
P 		36
(-1.6)
A 		23.9
(-2.7)
A 		20.3
(-3)
P 		68
B 82.1
(3)
P 		43.9
(-1.3)
A 		46.5
(-1)
P 		28.6
(-3)
P 		54
C 79.7
(3)
P 		66.8
(1.4)
A 		53.6
(-0.3)
P 		32.2
(-3)
A 		48
avr 83.3
(3) 		48.9
(-0.7) 		41.3
(-1.5) 		27
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 37.8
(-3)
A 		106.6
(3)
P 		40.8
(-2.7)
P 		38.7
(-2.9)
A 		49.7
(-2)
A 		44.1
(-2.5)
A 		69
B 60
(-0.5)
P 		85.2
(3)
P 		45.1
(-2.5)
P 		41.7
(-3)
P 		59
(-0.6)
A 		63.9
(0.1)
A 		44
C 79.5
(3)
P 		65.4
(1.2)
P 		54.3
(-0.2)
M 		31.9
(-3)
M 		70.2
(1.8)
A 		50.5
(-0.7)
A 		48
avr 59.1
(-0.3) 		85.7
(3) 		46.7
(-1.8) 		37.4
(-3) 		59.6
(-0.2) 		52.8
(-1.1) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5865
Sequence Type Exemplar sequence
Representative Public ID C56C10.12 NCBI
Target Description C56C10.12 /REP_DB=WormBase Gene ID /WP=CE02566 /TR=Q18892 /GB=AAA68780.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062942 NCBI Caenorhabditis elegans C56C10.12 (C56C10.12) mRNA, complete cds. 11/11 None
C56C10.12 ENSEMBL cdna:known chromosome:CEL140:II:6603386:6609301:-1 gene:C56C10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6603382-6609298(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56C10.12
Entrez Gene 3565794 Entrez gene
SwissProt Q18892 EMBL-EBI
WormBase CE02566 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68780 Hypothetical protein C56C10.12 [Caenorhabditis elegans] ref|NP_495343.1| C56C10.12 [Caenorhabditis elegans] 0.0
blast CAE60660 Hypothetical protein CBG04313 [Caenorhabditis briggsae] 0.0
blast XP_608319 PREDICTED: similar to CG14299-PA, isoform A [Bos taurus] 5.0E-56
Sequence
Target Sequence 
>C. ELEGANS:186623_AT
agcagatcaaagccctttaccaaccaacacagcagactattcctgttgaaattcgttgct
catattgctcgaaaccgaaagcatgcacaatgagcattaaaccgaatgttctgaactctg
aaattgatttacaaatgactcaaaacaggactaaacgtttcgaattttggaatgaacttt
atgcttctattgtcgataaggctgctgtagcaactgcaagcatcgaacatctatctgttc
tagtggctaaaatgacttcagcattgcatcctggaacaagaaataatgtgcagctcacag
gacattcactcttttatcttataacatcttctgttggagagaatgagttgttatttagtg
ttgcttctgattcattttgtaattcactccgatctttgggagaagagtatgtcaaattcc
gtcccgaagagcaaatggacgtcatgcaactggcattagatggatttgtactctctgaac
ctcttgttgaggtcttcactccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGATCAAAGCCCTTTACCAACC 216 77 4202 Antisense
CCAACCAACACAGCAGACTATTCCT 257 277 4221 Antisense
TGAAATTCGTTGCTCATATTGCTCG 349 571 4248 Antisense
GAACTTTATGCTTCTATTGTCGATA 130 351 4375 Antisense
ACTGCAAGCATCGAACATCTATCTG 507 97 4414 Antisense
GACTTCAGCATTGCATCCTGGAACA 619 369 4455 Antisense
GCTCACAGGACATTCACTCTTTTAT 695 301 4494 Antisense
ATTTTGTAATTCACTCCGATCTTTG 477 13 4575 Antisense
ATGTCAAATTCCGTCCCGAAGAGCA 492 47 4610 Antisense
GATGGATTTGTACTCTCTGAACCTC 648 407 4660 Antisense
CTCTTGTTGAGGTCTTCACTCCAGA 477 229 4682 Antisense
Sequence Source Affymetrix Proprietary Database