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[186622_at]

Description Y54E10A.7 /REP_DB=WormBase Gene ID /WP=CE22452 /TR=Q9N3F3 /GB=AAF60758.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 35      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 74      6grp_total > 36      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 606.7
(-2.7)
P 		888.8
(1.5)
P 		988.6
(3)
P 		583.5
(-3)
P 		405
B 663
(-0.7)
P 		828
(1.2)
P 		984.8
(3)
P 		461.4
(-3)
P 		523
C 659.5
(0.2)
P 		907.1
(3)
P 		886.1
(2.8)
P 		383.3
(-3)
P 		524
avr 643.1
(-0.9) 		874.6
(2) 		953.2
(3) 		476.1
(-3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 666.4
(3)
P 		592
(0.1)
P 		566.7
(-0.8)
P 		547.3
(-1.6)
P 		612.1
(0.9)
P 		510.1
(-3)
P 		156
B 658.6
(-0.1)
P 		723
(2.8)
P 		668.6
(0.4)
P 		593
(-3)
P 		665.2
(0.2)
P 		726.6
(3)
P 		134
C 650.9
(-0.4)
P 		748.5
(3)
P 		612.8
(-1.7)
P 		577.2
(-3)
P 		576.2
(-3)
P 		707.3
(1.6)
P 		172
avr 658.6
(1.5) 		687.8
(3) 		616
(-0.7) 		572.5
(-3) 		617.8
(-0.6) 		648
(0.9) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 220.9
(1.7)
P 		192.9
(0.7)
P 		258.4
(3)
P 		85.4
(-3)
P 		173
B 211.4
(2.2)
P 		204.5
(1.9)
P 		228.2
(3)
P 		98.3
(-3)
P 		130
C 218.3
(0.8)
P 		260.8
(1.8)
P 		308.8
(3)
P 		64.6
(-3)
P 		244
avr 216.9
(1.4) 		219.4
(1.5) 		265.1
(3) 		82.8
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 122.8
(-3)
P 		210.6
(3)
P 		123.4
(-3)
P 		138.8
(-1.9)
P 		184.7
(1.2)
P 		124.2
(-2.9)
P 		88
B 229.2
(0.8)
P 		240.7
(1.4)
P 		162.4
(-2.7)
P 		157.1
(-3)
P 		270.3
(3)
P 		270.9
(3)
P 		114
C 241.3
(3)
P 		228.4
(2.4)
P 		156
(-1.1)
P 		116.1
(-3)
P 		186.5
(0.4)
P 		236.8
(2.8)
P 		125
avr 197.8
(1.1) 		226.6
(3) 		147.3
(-2.3) 		137.3
(-3) 		213.8
(2.1) 		210.6
(1.9) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.74
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.7 NCBI
Target Description Y54E10A.7 /REP_DB=WormBase Gene ID /WP=CE22452 /TR=Q9N3F3 /GB=AAF60758.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058713(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058713 NCBI Caenorhabditis elegans Y54E10A.7 (Y54E10A.7) mRNA, complete cds. 10/11 None
SNAP00000033826 ENSEMBL cdna:SNAP chromosome:CEL140:I:3162505:3163514:1 10/11 None
GENEFINDER00000033855 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3162817:3163514:1 10/11 None
Y54E10A.7 ENSEMBL cdna:known chromosome:CEL140:I:3162517:3163650:1 gene:Y54E10A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3162516-3163514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.7
Entrez Gene 171889 Entrez gene
SwissProt Q9N3F3 EMBL-EBI
WormBase CE38572 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60758 Hypothetical protein Y54E10A.7 [Caenorhabditis elegans] ref|NP_491114.2| Y54E10A.7 [Caenorhabditis elegans] 7.0E-95
blast AAF60758 Hypothetical protein Y54E10A.7 [Caenorhabditis elegans] ref|NP_491114.2| Y54E10A.7 [Caenorhabditis elegans] 1.0E-94
blast CAE60546 Hypothetical protein CBG04173 [Caenorhabditis briggsae] 6.0E-86
blast CAE60546 Hypothetical protein CBG04173 [Caenorhabditis briggsae] 2.0E-83
blast CAE60546 Hypothetical protein CBG04173 [Caenorhabditis briggsae] 2.0E-80
blast AAH88765 Unknown (protein for MGC:108088) [Xenopus tropicalis] 8.0E-14
Sequence
Target Sequence 
>C. ELEGANS:186622_AT
gccgaccgtgtaaatcggtgcgcctttaaagcaatgtcagctcaccgagtggcagtgtca
ctgccaagaatcggcgtcacaattggtcacgcaccacaaaagctgaaaaccggaggaatt
gagccaagccgtcgtgctcgtctcgaagtgctccgtcgcatcgtcacccgaactgtccgt
gaggaacgcgccgagctgaaatggaaccgcgccgtcgaggccaggccatatttggagagg
ctaattcaattgggtgtcgaaagaggaccacttgacgagtatacagccgaaatgatggaa
tggtggctgcctgagaaggatttaattacgaaaatgcatgaagtaattgttccacgattc
caagaccgcgattctccattcacatcactattccgacttccaccacaacgtcttcaacaa
tttatccagaataagcgagaagtctggaagcgatacgatatcggagttctggaaatcgac
ggaaatccatttccacaaatacaagcagaccgcgtagatcaatctgaatcaattcttgat
gttcttctagctgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGACCGTGTAAATCGGTGCGCCT 702 257 121 Antisense
TCAGCTCACCGAGTGGCAGTGTCAC 302 623 157 Antisense
GTCACTGCCAAGAATCGGCGTCACA 660 463 177 Antisense
GCGTCACAATTGGTCACGCACCACA 676 291 194 Antisense
GGAATTGAGCCAAGCCGTCGTGCTC 597 533 235 Antisense
GTCACCCGAACTGTCCGTGAGGAAC 342 461 283 Antisense
GAACGCGCCGAGCTGAAATGGAACC 371 347 304 Antisense
CGCCGTCGAGGCCAGGCCATATTTG 470 257 330 Antisense
GGACCACTTGACGAGTATACAGCCG 326 523 385 Antisense
TCCATTCACATCACTATTCCGACTT 250 591 495 Antisense
TTCTTGATGTTCTTCTAGCTGACGC 629 689 653 Antisense
Sequence Source Affymetrix Proprietary Database