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[186620_s_at]

Description F45D11.12 /REP_DB=WormBase Gene ID /WP=CE23734 /TR=Q9N5T4 /GB=AAF39825.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 1.4
(-3)
A 		2.1
(-2.8)
A 		5.2
(-2.1)
A 		27.5
(3)
A 		26
B 2
(-3)
A 		6.6
(3)
A 		6.2
(2.5)
A 		5.5
(1.6)
A 		5
C 1.9
(-3)
A 		17.5
(-1)
A 		1.9
(-3)
A 		48.3
(3)
A 		46
avr 1.8
(-3) 		8.7
(-1.4) 		4.4
(-2.4) 		27.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.2
(-0.5)
A 		1.2
(-3)
A 		2
(-2.5)
A 		2.2
(-2.4)
A 		10.8
(3)
A 		1.8
(-2.6)
A 		10
B 1.5
(-2.7)
A 		4.4
(-0.8)
A 		1.1
(-3)
A 		10.3
(3)
A 		1.7
(-2.6)
A 		1.2
(-2.9)
A 		9
C 4.2
(2.6)
A 		2.8
(-0)
A 		4.4
(3)
A 		1.2
(-3)
A 		2
(-1.5)
A 		3.4
(1.1)
A 		3
avr 3.6
(0.3) 		2.8
(-1.4) 		2.5
(-2.1) 		4.6
(2.6) 		4.8
(3) 		2.1
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-3)
A 		0.5
(-3)
A 		1.3
(-1.6)
A 		4
(3)
A 		4
B 0.6
(-3)
A 		1.6
(3)
A 		1.4
(1.8)
A 		1.2
(0.6)
A 		1
C 0.6
(-3)
A 		5
(0.5)
A 		0.6
(-3)
A 		8.1
(3)
A 		8
avr 0.6
(-3) 		2.4
(-0.2) 		1.1
(-2.2) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-1.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-2.6)
A 		3.3
(3)
A 		0.4
(-3)
A 		3
B 0.5
(-2.5)
A 		1.5
(-0)
A 		0.3
(-3)
A 		2.7
(3)
A 		0.7
(-2)
A 		0.5
(-2.5)
A 		2
C 1.6
(3)
A 		0.9
(-0)
A 		1.1
(0.9)
A 		0.2
(-3)
A 		0.7
(-0.9)
A 		1.2
(1.3)
A 		1
avr 1
(-0.6) 		0.9
(-1.2) 		0.6
(-3) 		1.2
(0.6) 		1.6
(3) 		0.7
(-2.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186620_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4803
Sequence Type Exemplar sequence
Representative Public ID F45D11.12 NCBI
Target Description F45D11.12 /REP_DB=WormBase Gene ID /WP=CE23734 /TR=Q9N5T4 /GB=AAF39825.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061477(11), NM_061479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061477 NCBI Caenorhabditis elegans F45D11.8 (F45D11.8) mRNA, complete cds. 11/11 None
NM_061479 NCBI Caenorhabditis elegans F45D11.12 (F45D11.12) mRNA, complete cds. 11/11 None
SNAP00000019551 ENSEMBL cdna:SNAP chromosome:CEL140:II:991706:994195:1 10/11 None
SNAP00000019553 ENSEMBL cdna:SNAP chromosome:CEL140:II:998874:999599:-1 11/11 None
F45D11.8 ENSEMBL cdna:known chromosome:CEL140:II:993015:994195:1 gene:F45D11.8 11/11 None
F45D11.12 ENSEMBL cdna:known chromosome:CEL140:II:998749:999599:-1 gene:F45D11.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019578 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:993242-993939(+) 83.19 83.19
chrII:998747-999598(-) 84.96 100.0
Public Domain and Genome References
Gene Title

Ensembl F45D11.8
F45D11.12
Entrez Gene 185784 Entrez gene
185786 Entrez gene
SwissProt Q9N5T4 EMBL-EBI
Q9N5T8 EMBL-EBI
WormBase CE23734 Wormbase
CE23740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39823 Hypothetical protein F45D11.8 [Caenorhabditis elegans] ref|NP_493878.1| F45D11.8 [Caenorhabditis elegans] 1.0E-160
blast AAF39820 Hypothetical protein F45D11.9 [Caenorhabditis elegans] ref|NP_493877.1| F45D11.9 [Caenorhabditis elegans] 1.0E-157
blast AAF39823 Hypothetical protein F45D11.8 [Caenorhabditis elegans] ref|NP_493878.1| F45D11.8 [Caenorhabditis elegans] 1.0E-131
blast AAF39825 Hypothetical protein F45D11.12 [Caenorhabditis elegans] ref|NP_493880.1| F45D11.12 [Caenorhabditis elegans] 1.0E-113
blast AAF39823 Hypothetical protein F45D11.8 [Caenorhabditis elegans] ref|NP_493878.1| F45D11.8 [Caenorhabditis elegans] 1.0E-102
blast AAF39825 Hypothetical protein F45D11.12 [Caenorhabditis elegans] ref|NP_493880.1| F45D11.12 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:186620_S_AT
tcagttagctgtatcagttctctcgaagaaaacaaaacgacttattacatcagttgtgaa
taaaaatcaagccatcgaaatacgcaaatatttaaacaacagatacataactacatacgt
agatgttccaggatttactgagaaacaatggttcaaacatattactgatgttttcttcag
gaatccgtatacatttttgaaaatcagatactcagcaggaagaagtattgaagaggtatt
tgaatatacaaaggaactgcaaatacagggtttgaaagttgagtactctttaattcaaaa
ctgcgagcttctcaaactgttcccatcactaatatatttaaccgtttatggccaggatcc
acttccaaaatctttcctcaatctgagtttagagggtctagaactttattacattgatgt
gacactcgacgagcttctagctttaaatcactctgaatttgctctaagcactcagaattg
ttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTTAGCTGTATCAGTTCTCTCG 44 623 93 Antisense
GATGTTTTCTTCAGGAATCCGTATA 52 411 259 Antisense
AACTGCGAGCTTCTCAAACTGTTCC 138 143 391 Antisense
AAACTGTTCCCATCACTAATATATT 510 125 406 Antisense
TTTATGGCCAGGATCCACTTCCAAA 382 671 437 Antisense
CCACTTCCAAAATCTTTCCTCAATC 594 269 451 Antisense
GAGGGTCTAGAACTTTATTACATTG 188 403 484 Antisense
GTGACACTCGACGAGCTTCTAGCTT 168 483 511 Antisense
AGCTTCTAGCTTTAAATCACTCTGA 249 79 524 Antisense
ATCACTCTGAATTTGCTCTAAGCAC 191 29 539 Antisense
GCTCTAAGCACTCAGAATTGTTCCG 673 299 553 Antisense
Sequence Source Affymetrix Proprietary Database