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[186619_at]

Description F15E11.10 /REP_DB=WormBase Gene ID /WP=CE17007 /TR=O44598 /GB=AAB94197.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 26      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 22.3
(3)
A 		11.1
(-2.9)
A 		10.9
(-3)
A 		12
(-2.4)
A 		11
B 12.2
(-3)
A 		64.7
(3)
A 		42.9
(0.5)
A 		33.6
(-0.6)
A 		53
C 23.6
(-1.4)
A 		9
(-3)
A 		10.7
(-2.8)
A 		64.8
(3)
A 		56
avr 19.4
(-3) 		28.3
(0.1) 		21.5
(-2.3) 		36.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 27.1
(2.5)
A 		25.7
(2.1)
A 		12.5
(-1.1)
A 		4.8
(-3)
A 		29.3
(3)
A 		24.5
(1.8)
A 		25
B 21.7
(-0.8)
A 		27.8
(1.1)
A 		15.5
(-2.6)
A 		14.3
(-3)
A 		26.4
(0.6)
A 		34.3
(3)
A 		20
C 11
(-2.5)
A 		6.7
(-3)
A 		56.8
(3)
A 		38.4
(0.8)
A 		33.2
(0.2)
A 		23.1
(-1)
A 		50
avr 19.9
(-2.6) 		20.1
(-2.5) 		28.3
(2.3) 		19.2
(-3) 		29.6
(3) 		27.3
(1.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.1
(3)
A 		2.4
(-2.4)
A 		2.9
(-2)
A 		1.8
(-3)
A 		6
B 3.9
(-3)
A 		16
(3)
A 		9.9
(-0)
A 		7.2
(-1.4)
A 		12
C 7.8
(0.8)
A 		2.6
(-3)
A 		3.7
(-2.2)
A 		10.9
(3)
A 		8
avr 6.6
(1.4) 		7
(3) 		5.5
(-3) 		6.6
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5
(-0.1)
A 		9.1
(3)
A 		2.7
(-1.9)
A 		1.2
(-3)
A 		8.8
(2.8)
A 		6
(0.6)
A 		8
B 7.6
(-0.5)
A 		9.2
(0.6)
A 		3.8
(-3)
A 		3.8
(-3)
A 		10.7
(1.6)
A 		12.8
(3)
A 		9
C 4.1
(-2)
A 		2
(-3)
A 		14.4
(3)
A 		7.7
(-0.2)
A 		10.7
(1.2)
A 		7.7
(-0.2)
A 		12
avr 5.6
(-1.6) 		6.8
(-0.4) 		7
(-0.2) 		4.2
(-3) 		10.1
(3) 		8.8
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15231
Sequence Type Exemplar sequence
Representative Public ID F15E11.10 NCBI
Target Description F15E11.10 /REP_DB=WormBase Gene ID /WP=CE17007 /TR=O44598 /GB=AAB94197.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071246 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-15) (srbc-15) mRNA, complete cds. 11/11 None
F15E11.10 ENSEMBL cdna:known chromosome:CEL140:V:2345504:2348006:1 gene:F15E11.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032944 3/11 Cross Hyb Matching Probes None
SNAP00000041501 8/11 Cross Hyb Matching Probes None
GENEFINDER00000041508 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2345503-2347893(+) 93.33 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-15
Ensembl F15E11.10
Entrez Gene 184542 Entrez gene
WormBase CE38064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503647 Serpentine Receptor, class BC (class B-like) family member (srbc-15) [Caenorhabditis elegans] 1.0E-146
blast F88969 protein F15E11.10 [imported] - Caenorhabditis elegans 1.0E-128
blast CAE74168 Hypothetical protein CBG21841 [Caenorhabditis briggsae] 8.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.9E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503647.2 4 5-27,40-62,77-99,120-142
F15E11.10 4 5-27,40-62,77-99,120-142
Sequence
Target Sequence 
>C. ELEGANS:186619_AT
ttgatgttttatttgggccttgcgagttcaaatctagtcacagtcagatcaatcatcgta
ctatccgtttccacagaaagagcagttgccacatatatgccgatgtttttctacaaatat
cacgaacaaagccccagaatttcaataattctcatagctgtttcattcggaatgttcgag
tccctcgtactttttgtattttgctcttttgaacttaacctctcggcatcatgcgcagct
atgggctgtgcaacagcttcccaatacatgcttctccacttactggtccaatcaaaagct
ggttttgtcttgaagctatttgagacgaaaagttttggaaaaatatttgaaaaagagtac
aaaaacttatgggacaacctgatatttaagatcaatcgtctcgctctcatcgatgttgcc
aatgtctgtctatcggacttttttccattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATGTTTTATTTGGGCCTTGCGA 540 705 241 Antisense
CAATCATCGTACTATCCGTTTCCAC 574 181 290 Antisense
AATTCTCATAGCTGTTTCATTCGGA 565 175 387 Antisense
GAATGTTCGAGTCCCTCGTACTTTT 251 327 410 Antisense
TCTTTTGAACTTAACCTCTCGGCAT 367 613 445 Antisense
TCTCGGCATCATGCGCAGCTATGGG 544 609 461 Antisense
AACAGCTTCCCAATACATGCTTCTC 110 137 492 Antisense
CTTCTCCACTTACTGGTCCAATCAA 684 219 511 Antisense
TTTAAGATCAATCGTCTCGCTCTCA 466 673 625 Antisense
ATGTTGCCAATGTCTGTCTATCGGA 296 47 653 Antisense
GTCTATCGGACTTTTTTCCATTCAT 560 469 668 Antisense
Sequence Source Affymetrix Proprietary Database