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[186618_at]

Description Y105C5B.23 /REP_DB=WormBase Gene ID /WP=CE24073 /TR=Q9NAL9 /GB=CAB54371.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 30
(-2.2)
A 		12.5
(-2.9)
A 		9.5
(-3)
A 		167.8
(3)
A 		158
B 73.2
(3)
A 		50.8
(-0.2)
A 		36.7
(-2.2)
A 		30.9
(-3)
A 		42
C 65
(-0.6)
A 		16
(-2.7)
A 		9
(-3)
A 		147.5
(3)
A 		139
avr 56.1
(-0.7) 		26.4
(-2.5) 		18.4
(-3) 		115.4
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 72.5
(3)
A 		7.3
(-3)
A 		7.8
(-2.9)
A 		37.3
(-0.2)
A 		47.9
(0.7)
A 		7.1
(-3)
A 		65
B 8.6
(-3)
A 		9.4
(-2.8)
A 		28.2
(3)
A 		10.2
(-2.5)
A 		22.8
(1.3)
A 		23.4
(1.5)
A 		20
C 8.6
(-3)
A 		61.6
(2.9)
A 		35.3
(-0)
A 		34.1
(-0.2)
A 		62.4
(3)
A 		44.3
(1)
A 		54
avr 29.9
(-1.2) 		26.1
(-2.3) 		23.8
(-3) 		27.2
(-2) 		44.4
(3) 		24.9
(-2.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 10.9
(-0.7)
A 		2.7
(-2.9)
A 		2.5
(-3)
A 		24.6
(3)
A 		22
B 23.3
(3)
A 		12.6
(-0.8)
A 		8.5
(-2.3)
A 		6.6
(-3)
A 		17
C 21.5
(2.1)
A 		4.6
(-2.6)
A 		3.1
(-3)
A 		24.9
(3)
A 		22
avr 18.6
(3) 		6.6
(-2.2) 		4.7
(-3) 		18.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13.4
(2.5)
A 		2.6
(-2.6)
A 		1.7
(-3)
A 		9.5
(0.7)
A 		14.5
(3)
A 		1.7
(-3)
A 		13
B 3
(-2.7)
A 		3.1
(-2.6)
A 		6.8
(0.8)
A 		2.7
(-3)
A 		9.2
(3)
A 		8.7
(2.5)
A 		7
C 3.2
(-3)
A 		18.8
(2.5)
A 		9
(-1)
A 		6.8
(-1.7)
A 		20.2
(3)
A 		14.8
(1.1)
A 		17
avr 6.5
(-2.5) 		8.2
(-1.4) 		5.8
(-3) 		6.3
(-2.7) 		14.6
(3) 		8.4
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10112
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.23 NCBI
Target Description Y105C5B.23 /REP_DB=WormBase Gene ID /WP=CE24073 /TR=Q9NAL9 /GB=CAB54371.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070511 NCBI Caenorhabditis elegans Y105C5B.23 (Y105C5B.23) mRNA, complete cds. 11/11 None
GENEFINDER00000018442 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16057244:16061319:1 11/11 None
Y105C5B.23 ENSEMBL cdna:known chromosome:CEL140:IV:16057244:16061319:1 gene:Y105C5B.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16057249-16061325(+) 99.21 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.23
Entrez Gene 190899 Entrez gene
SwissProt Q9NAL9 EMBL-EBI
WormBase CE24073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54371 Hypothetical protein Y105C5B.23 [Caenorhabditis elegans] ref|NP_502912.1| Y105C5B.23 [Caenorhabditis elegans] 0.0
blast CAE68037 Hypothetical protein CBG13654 [Caenorhabditis briggsae] 4.0E-84
blast CAE68037 Hypothetical protein CBG13654 [Caenorhabditis briggsae] 1.0E-83
blast CAB05269 Hypothetical protein R05A10.8 [Caenorhabditis elegans] ref|NP_502714.1| R05A10.8 [Caenorhabditis elegans] 4.0E-81
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 5.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502912.1 1 24-46
Y105C5B.23 1 24-46
GENEFINDER00000018442 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:186618_AT
ttgcacattattatcacttggcttaaacaatcaaatcgactatgatcagcacattcaaaa
tgttacaggaggacattgtgtgatattgggagctgataaggacccccaaaacccggaaac
ccaagaaacctaccgaaaaatcaatgggaaactattttctggactgattcctgatgagct
cacgatcccatcaatgttagaaaaagctggaagaaatgatgtggagcttctgaaaatgga
tattgaagaagccgaatttaggggtttggagcctctgattaaggatttttatgtgtgtca
gatttttattgaaattcacgggactccatcgaaacacctggaattgcttcagattatggc
cagatacggattccgaattttcaacgtggaacccaatccgtattgcatagtttgttgtga
atatagtttgatcaatgagaaatgtatagagcaatatggagctgtgttgctgggacgcat
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCACATTATTATCACTTGGCTTA 331 703 516 Antisense
TGGGAGCTGATAAGGACCCCCAAAA 47 553 602 Antisense
GGACTGATTCCTGATGAGCTCACGA 380 525 676 Antisense
AGCTCACGATCCCATCAATGTTAGA 604 79 692 Antisense
AGGGGTTTGGAGCCTCTGATTAAGG 520 55 775 Antisense
ATTGAAATTCACGGGACTCCATCGA 462 3 823 Antisense
GGGACTCCATCGAAACACCTGGAAT 284 495 835 Antisense
GGAATTGCTTCAGATTATGGCCAGA 118 535 855 Antisense
TTATGGCCAGATACGGATTCCGAAT 168 679 869 Antisense
GTGGAACCCAATCCGTATTGCATAG 233 491 901 Antisense
GAGCTGTGTTGCTGGGACGCATTGT 188 387 974 Antisense
Sequence Source Affymetrix Proprietary Database