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[186617_s_at]

Description R06F6.4 /REP_DB=WormBase Gene ID /WP=CE16303 /TR=SW:Q09415 /GB=CAA86783.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 45      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 224.2
(1.9)
P 		238
(3)
A 		162.8
(-3)
A 		196.9
(-0.3)
A 		75
B 279.3
(3)
P 		259.6
(1.8)
A 		190.9
(-2.2)
A 		177.5
(-3)
A 		102
C 302.2
(3)
P 		286.7
(1.6)
A 		233.8
(-3)
A 		239.1
(-2.5)
A 		68
avr 268.6
(3) 		261.4
(2.4) 		195.8
(-3) 		204.5
(-2.3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 193.4
(-2.5)
A 		233.8
(-0.6)
P 		183.5
(-3)
M 		215
(-1.5)
A 		269.7
(1.2)
A 		308.1
(3)
P 		125
B 276.4
(0.7)
P 		166.8
(-2.9)
A 		163.6
(-3)
M 		222.7
(-1)
P 		202.5
(-1.7)
A 		345.3
(3)
P 		182
C 195.1
(-3)
P 		249.7
(-1.2)
P 		210.8
(-2.5)
A 		286.2
(-0)
P 		210.5
(-2.5)
A 		377.8
(3)
P 		183
avr 221.6
(-1.6) 		216.8
(-1.8) 		186
(-3) 		241.3
(-0.9) 		227.6
(-1.4) 		343.7
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 81.6
(3)
P 		51.7
(-0.4)
A 		42.6
(-1.4)
A 		28.8
(-3)
A 		53
B 89.1
(3)
P 		64.1
(0.1)
A 		44.2
(-2.3)
A 		37.8
(-3)
A 		51
C 100
(3)
P 		82.4
(1.2)
A 		81.5
(1.1)
A 		40.3
(-3)
A 		60
avr 90.2
(3) 		66.1
(0.4) 		56.1
(-0.7) 		35.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 35.7
(-3)
A 		83.2
(3)
P 		40
(-2.5)
M 		54.5
(-0.6)
A 		81.4
(2.8)
A 		75
(2)
P 		48
B 96.2
(0.8)
P 		55.5
(-1.9)
A 		39.7
(-3)
M 		59
(-1.7)
P 		82.3
(-0.1)
A 		128.8
(3)
P 		89
C 72.3
(-1.5)
P 		76.2
(-1.1)
P 		53.7
(-3)
A 		57.6
(-2.7)
P 		68.1
(-1.8)
A 		126.5
(3)
P 		73
avr 68.1
(-0.8) 		71.6
(-0.5) 		44.5
(-3) 		57
(-1.9) 		77.3
(0) 		110.1
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186617_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3642
Sequence Type Exemplar sequence
Representative Public ID R06F6.4 NCBI
Target Description R06F6.4 /REP_DB=WormBase Gene ID /WP=CE16303 /TR=SW:Q09415 /GB=CAA86783.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063922 NCBI Caenorhabditis elegans R06F6.4 (R06F6.4) mRNA, complete cds. 11/11 None
SNAP00000015429 ENSEMBL cdna:SNAP chromosome:CEL140:II:10793745:10796419:-1 11/11 None
GENEFINDER00000015439 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10793745:10796199:-1 11/11 None
R06F6.4 ENSEMBL cdna:known chromosome:CEL140:II:10793486:10796205:-1 gene:R06F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10793741-10796196(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06F6.4
Entrez Gene 174662 Entrez gene
SwissProt Q09415 EMBL-EBI
WormBase CE16303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86783 Hypothetical protein R06F6.4 [Caenorhabditis elegans] ref|NP_496323.1| R06F6.4 [Caenorhabditis elegans] sp|Q09415|YRM4_CAEEL Hypothetical protein R06F6.4 in chromosome II 0.0
blast CAE59608 Hypothetical protein CBG03016 [Caenorhabditis briggsae] 1.0E-135
blast AAH97455 Hypothetical protein LOC498295 [Rattus norvegicus] ref|NP_001020933.1| hypothetical protein LOC498295 [Rattus norvegicus] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 8.4E-21
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 8.4E-21
Sequence
Target Sequence 
>C. ELEGANS:186617_S_AT
aacgcacgaatggaagcctggacttgcgggatttgtgtgaaaggatggatgagaaacaag
gaaaatggtcaatgtgaactgtgtggctggacaatgagcaaggatcattttgaattgtgt
cgaacggcagaggaagctggcatcgccgcacgttcgagacttgcgaatgatgcgattccg
ttggagacgaagagaaatttgtgtgaaaaattgttagatctatttcaagacacgttacat
gatcataatgttcatcgtattcctgtgctcagatgtttgtatatttgctcattggcggca
cagaatatcacagccgctgccaaaaccggcggaacccttctctccatcatgctcgtctac
caaaacaccactgatccggcgatcttattccaaaaatatcaacttgcccaactattttgc
gctgccggagcaaagacacaggcgaccaaattgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCACGAATGGAAGCCTGGACTT 343 139 748 Antisense
GCCTGGACTTGCGGGATTTGTGTGA 612 283 763 Antisense
GAACGGCAGAGGAAGCTGGCATCGC 442 347 869 Antisense
TCGCCGCACGTTCGAGACTTGCGAA 704 599 890 Antisense
TAATGTTCATCGTATTCCTGTGCTC 119 637 993 Antisense
GTATATTTGCTCATTGGCGGCACAG 708 453 1026 Antisense
TACCAAAACACCACTGATCCGGCGA 231 649 1105 Antisense
GATCCGGCGATCTTATTCCAAAAAT 443 415 1120 Antisense
CAACTTGCCCAACTATTTTGCGCTG 674 187 1147 Antisense
TGCGCTGCCGGAGCAAAGACACAGG 143 581 1165 Antisense
AGACACAGGCGACCAAATTGCTCCA 558 71 1181 Antisense
Sequence Source Affymetrix Proprietary Database