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[186616_at]

Description Y105C5A.14 /REP_DB=WormBase Gene ID /WP=CE24052 /TR=Q9U319 /GB=CAB60306.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 54      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 395
(3)
P 		248.9
(-0.2)
P 		142.8
(-2.5)
P 		119.6
(-3)
P 		275
B 436.5
(3)
P 		271.8
(-1.7)
P 		242.5
(-2.6)
P 		227.9
(-3)
P 		209
C 549.8
(3)
P 		201.9
(-3)
P 		316.6
(-1)
P 		212.2
(-2.8)
P 		348
avr 460.4
(3) 		240.9
(-1.8) 		234
(-2) 		186.6
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 333.5
(-0.3)
P 		426.9
(1.5)
P 		509.8
(3)
P 		281.4
(-1.3)
P 		254.2
(-1.8)
P 		188.2
(-3)
P 		322
B 458.8
(3)
P 		410.2
(1.7)
P 		356.4
(0.2)
P 		458
(3)
P 		265.2
(-2.2)
P 		236.4
(-3)
P 		222
C 361.1
(1.1)
P 		412.5
(2.4)
P 		438
(3)
P 		406.4
(2.2)
P 		201.1
(-3)
P 		219.4
(-2.5)
P 		237
avr 384.5
(1.6) 		416.5
(2.5) 		434.7
(3) 		381.9
(1.6) 		240.2
(-2.3) 		214.7
(-3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 143.8
(3)
P 		54
(-1.3)
P 		37.3
(-2.1)
P 		17.5
(-3)
P 		126
B 139.2
(3)
P 		67.1
(-1.8)
P 		56.2
(-2.5)
P 		48.6
(-3)
P 		91
C 182
(3)
P 		58
(-2.1)
P 		110.4
(0.1)
P 		35.8
(-3)
P 		146
avr 155
(3) 		59.7
(-1.7) 		68
(-1.3) 		34
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 61.5
(-2.1)
P 		151.8
(3)
P 		111
(0.7)
P 		71.4
(-1.6)
P 		76.7
(-1.3)
P 		45.8
(-3)
P 		106
B 159.7
(3)
P 		136.5
(1.1)
P 		86.6
(-3)
P 		121.3
(-0.2)
P 		107.7
(-1.3)
P 		88.2
(-2.9)
P 		73
C 133.9
(3)
P 		125.9
(2.3)
P 		111.5
(1)
P 		81.7
(-1.6)
P 		65.1
(-3)
P 		73.5
(-2.3)
P 		69
avr 118.4
(1.3) 		138.1
(3) 		103
(-0.1) 		91.5
(-1.1) 		83.2
(-1.8) 		69.2
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9847
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.14 NCBI
Target Description Y105C5A.14 /REP_DB=WormBase Gene ID /WP=CE24052 /TR=Q9U319 /GB=CAB60306.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070481 NCBI Caenorhabditis elegans Y105C5A.14 (Y105C5A.14) mRNA, complete cds. 11/11 None
Y105C5A.14 ENSEMBL cdna:known chromosome:CEL140:IV:15646115:15651753:-1 gene:Y105C5A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033711 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033784 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033787 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15646120-15651759(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.14
Entrez Gene 190878 Entrez gene
SwissProt Q9U319 EMBL-EBI
WormBase CE24052 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60306 Hypothetical protein Y105C5A.14 [Caenorhabditis elegans] ref|NP_502882.1| Y105C5A.14 [Caenorhabditis elegans] 0.0
blast T31570 hypothetical protein Y105C5A.m - Caenorhabditis elegans 0.0
blast CAB03918 Hypothetical protein C25F9.2 [Caenorhabditis elegans] ref|NP_507780.1| C25F9.2 [Caenorhabditis elegans] 8.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 6.9E-8
Pfam IPR004868 EMBL-EBI DNA polymerase type B, organellar and viral 8.8E-15
Sequence
Target Sequence 
>C. ELEGANS:186616_AT
gattctgcccaatttctcaagatgcggttggaagaaatgcccaaagccttcagtctaaaa
gccaaatcaaatggctatttcccgtacctcttcaatcacgaagaccactatggacttgtg
cttcctcatctaccagcaatcgaatattatgagccaacttctatgaaaccggaaagccga
gaaaagtttgagcagtggtacaacgaaaactacgacaagccttttgatttcgacgaggag
attcaaaagtattgccaaatggacgtacagatcctgacagaatccatgattaaattcacg
gaggttaccggcattgtcctcaataaggaggaaaccctcagcgattgggccagggaagta
cttcgcatcgaccaaatccactatgcttgcatggatgcaatcattctccatcacatttat
gacgagaacattgagggcgaaactatgagtgattggacggacacttatttgctgggagac
caactgagatacgcggttacggttatggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGCCCAATTTCTCAAGATGC 183 433 913 Antisense
AGAAATGCCCAAAGCCTTCAGTCTA 255 73 945 Antisense
AATCAAATGGCTATTTCCCGTACCT 599 95 977 Antisense
TTCCCGTACCTCTTCAATCACGAAG 288 697 991 Antisense
CACTATGGACTTGTGCTTCCTCATC 341 197 1018 Antisense
CTTCCTCATCTACCAGCAATCGAAT 379 219 1033 Antisense
ACGACAAGCCTTTTGATTTCGACGA 287 93 1124 Antisense
TCACGGAGGTTACCGGCATTGTCCT 569 625 1208 Antisense
GAGGAAACCCTCAGCGATTGGGCCA 317 405 1240 Antisense
GACGGACACTTATTTGCTGGGAGAC 131 377 1368 Antisense
GAGATACGCGGTTACGGTTATGGAT 299 395 1398 Antisense
Sequence Source Affymetrix Proprietary Database