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[186615_at]

Description F36H12.15 /REP_DB=WormBase Gene ID /WP=CE09985 /TR=O76716 /GB=AAC26937.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 5
(-3)
A 		10.4
(-2.1)
A 		41.1
(3)
A 		30.2
(1.2)
A 		36
B 16.5
(3)
A 		8.5
(-0.4)
A 		5.2
(-1.7)
A 		2.2
(-3)
A 		14
C 36.5
(3)
A 		11.2
(-1.4)
A 		2
(-3)
A 		28.4
(1.6)
A 		35
avr 19.3
(2.4) 		10
(-3) 		16.1
(0.6) 		20.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10.3
(-2.2)
A 		12.2
(-1.9)
A 		4.4
(-3)
A 		7.4
(-2.6)
A 		5.1
(-2.9)
A 		48.3
(3)
A 		44
B 15.3
(0.1)
A 		27.6
(3)
A 		2.2
(-3)
A 		3.4
(-2.7)
A 		5.3
(-2.3)
A 		7.4
(-1.8)
A 		25
C 7.1
(-1.9)
A 		8.9
(-1.3)
A 		24.4
(3)
A 		6.3
(-2.1)
A 		6.5
(-2)
A 		3
(-3)
A 		21
avr 10.9
(-0.7) 		16.2
(1.5) 		10.3
(-1) 		5.7
(-3) 		5.6
(-3) 		19.6
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.8
(-3)
A 		2.3
(-2.7)
A 		10.7
(3)
A 		4.4
(-1.2)
A 		9
B 5.3
(3)
A 		2.1
(-1)
A 		1.2
(-2.1)
A 		0.5
(-3)
A 		5
C 12.1
(3)
A 		3.2
(-1.7)
A 		0.7
(-3)
A 		4.8
(-0.8)
A 		11
avr 6.4
(3) 		2.5
(-3) 		4.2
(-0.4) 		3.2
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.9
(-2.4)
A 		4.3
(-1.1)
A 		0.9
(-3)
A 		1.9
(-2.4)
A 		1.6
(-2.6)
A 		11.8
(3)
A 		11
B 5.3
(0.3)
A 		9.2
(3)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		2.2
(-1.8)
A 		2.8
(-1.4)
A 		9
C 2.6
(-1.2)
A 		2.7
(-1)
A 		6.2
(3)
A 		1.3
(-2.7)
A 		2.1
(-1.7)
A 		1
(-3)
A 		5
avr 3.3
(-0.2) 		5.4
(3) 		2.5
(-1.4) 		1.4
(-3) 		2
(-2.1) 		5.2
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10373
Sequence Type Exemplar sequence
Representative Public ID F36H12.15 NCBI
Target Description F36H12.15 /REP_DB=WormBase Gene ID /WP=CE09985 /TR=O76716 /GB=AAC26937.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068363 NCBI Caenorhabditis elegans F36H12.15 (F36H12.15) mRNA, complete cds. 11/11 None
GENEFINDER00000002652 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5268129:5268409:-1 10/11 None
F36H12.15 ENSEMBL cdna:known chromosome:CEL140:IV:5268129:5268548:-1 gene:F36H12.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5268134-5268554(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H12.15
Entrez Gene 185400 Entrez gene
SwissProt O76716 EMBL-EBI
WormBase CE09985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26937 Hypothetical protein F36H12.15 [Caenorhabditis elegans] ref|NP_500764.1| F36H12.15 [Caenorhabditis elegans] 1.0E-26
blast AAC26937 Hypothetical protein F36H12.15 [Caenorhabditis elegans] ref|NP_500764.1| F36H12.15 [Caenorhabditis elegans] 4.0E-23
blast CAE72734 Hypothetical protein CBG19973 [Caenorhabditis briggsae] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500764.1 1 40-62
F36H12.15 1 40-62
GENEFINDER00000002652 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:186615_AT
caaccatattacaacatgctcccttgtggaaatagatccaactaccgtttacatgttcat
caaatcatccactacaaccacatttactctctggattcctggagaaattgccacgtggta
tgttgcaattaccatcggattggtgcttctgcttctcgtggtttgcatgattctcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATATTACAACATGCTCCCTT 405 187 18 Antisense
CATGCTCCCTTGTGGAAATAGATCC 501 209 32 Antisense
AATAGATCCAACTACCGTTTACATG 246 171 48 Antisense
CTACCGTTTACATGTTCATCAAATC 465 213 59 Antisense
TCATCAAATCATCCACTACAACCAC 5 621 74 Antisense
CACTACAACCACATTTACTCTCTGG 451 197 87 Antisense
CACATTTACTCTCTGGATTCCTGGA 222 195 96 Antisense
GAAATTGCCACGTGGTATGTTGCAA 5 363 121 Antisense
GCAATTACCATCGGATTGGTGCTTC 377 323 142 Antisense
CTTCTGCTTCTCGTGGTTTGCATGA 183 221 163 Antisense
TCTCGTGGTTTGCATGATTCTCATA 690 609 171 Antisense
Sequence Source Affymetrix Proprietary Database