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[186614_at]

Description ZK795.3 /REP_DB=WormBase Gene ID /WP=CE18464 /TR=SW:O62518 /GB=CAB05841.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 97      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 97      6grp_total > 86      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 583
1 2 3 4 range
A 943.3
(-3)
P 		1229.8
(0.8)
P 		1400.2
(3)
P 		1040.8
(-1.7)
P 		457
B 1161.5
(-1)
P 		1119.9
(-1.5)
P 		1526.3
(3)
P 		982.6
(-3)
P 		544
C 1130.4
(-1.7)
P 		1095
(-2.2)
P 		1440.8
(3)
P 		1043.9
(-3)
P 		397
avr 1078.4
(-2.2) 		1148.2
(-1.3) 		1455.8
(3) 		1022.4
(-3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1056
1 2 3 4 5 6 range
A 645.3
(-3)
P 		765.3
(-1.9)
P 		721.4
(-2.3)
P 		1122.8
(1.3)
P 		998.6
(0.2)
P 		1307.7
(3)
P 		662
B 535.1
(-3)
P 		880.3
(-0.7)
P 		641.3
(-2.3)
P 		925.4
(-0.4)
P 		1156.4
(1.2)
P 		1431.1
(3)
P 		896
C 581
(-3)
P 		717.7
(-2.2)
P 		687.1
(-2.4)
P 		1018.4
(-0.4)
P 		934
(-0.9)
P 		1591.5
(3)
P 		1011
avr 587.1
(-3) 		787.8
(-1.6) 		683.3
(-2.3) 		1022.2
(0) 		1029.7
(0.1) 		1443.4
(3) 		856
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 343.4
(2.4)
P 		267
(0.2)
P 		366
(3)
P 		152.3
(-3)
P 		214
B 370.4
(3)
P 		276.6
(-0.5)
P 		353.7
(2.4)
P 		209.4
(-3)
P 		161
C 374.2
(0.6)
P 		314.8
(-0.4)
P 		502.2
(3)
P 		176
(-3)
P 		326
avr 362.7
(1.8) 		286.1
(-0.2) 		407.3
(3) 		179.2
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 119
(-3)
P 		272.2
(1.6)
P 		157.1
(-1.9)
P 		284.8
(2)
P 		301.3
(2.5)
P 		318.4
(3)
P 		199
B 186.2
(-2.5)
P 		293
(-0.8)
P 		155.7
(-3)
P 		245.1
(-1.6)
P 		469.8
(2)
P 		533.6
(3)
P 		378
C 215.4
(-2.3)
P 		219
(-2.3)
P 		174.9
(-3)
P 		204.8
(-2.5)
P 		302.2
(-0.9)
P 		532.8
(3)
P 		358
avr 173.5
(-2.8) 		261.4
(-1) 		162.6
(-3) 		244.9
(-1.3) 		357.8
(0.9) 		461.6
(3) 		299
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9724
Sequence Type Exemplar sequence
Representative Public ID ZK795.3 NCBI
Target Description ZK795.3 /REP_DB=WormBase Gene ID /WP=CE18464 /TR=SW:O62518 /GB=CAB05841.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070003 NCBI Caenorhabditis elegans ZK795.3 (ZK795.3) mRNA, complete cds. 11/11 None
SNAP00000033764 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12559337:12560548:1 11/11 None
GENEFINDER00000033768 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12559337:12560548:1 11/11 None
ZK795.3 ENSEMBL cdna:known chromosome:CEL140:IV:12559336:12560659:1 gene:ZK795.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12559342-12560554(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK795.3
Entrez Gene 178207 Entrez gene
SwissProt O62518 EMBL-EBI
WormBase CE18464 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260323_AT brix domain-containing protein at
CANINE:1583433_AT similar to IMP4, U3 small nucleolar ribonucleoprotein, homolog cfa
CANINE_2:CFA.10949.1.A1_S_AT similar to IMP4, U3 small nucleolar ribonucleoprotein, homolog cfa
CANINE_2:CFA.19149.1.A1_S_AT similar to IMP4, U3 small nucleolar ribonucleoprotein, homolog cfa
DROSOPHILA_2:1635437_AT dm
DROSGENOME1:153152_AT dm
HU35KSUBC:RC_AA282151_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
U133_X3P:HS.91579.0.S1_3P_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
HG-U133A_2:212411_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
HG-U133_PLUS_2:212411_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
HG-U133A:212411_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
HG-U95AV2:38275_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) hs
MU11KSUBA:AA474881_S_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MG-U74AV2:95428_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MG-U74BV2:116091_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MG-U74AV2:162197_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOE430A:1426214_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOUSE430A_2:1426214_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOUSE430_2:1426214_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOE430A:1426213_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOUSE430A_2:1426213_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MOUSE430_2:1426213_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) mm
MU19KSUBB:TC32512_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast), mRNA (cDNA clone IMAGE:5135392) mm
MU19KSUBC:TC40534_AT IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast), mRNA (cDNA clone IMAGE:5135392) mm
RG-U34B:RC_AA801230_G_AT similar to IMP4 (predicted) rn
RG-U34B:RC_AA801230_AT similar to IMP4 (predicted) rn
RAE230A:1371957_AT similar to IMP4 (predicted) rn
RAT230_2:1371957_AT similar to IMP4 (predicted) rn
RAE230B:1379407_AT Similar to IMP4 (predicted) rn
RAT230_2:1379407_AT Similar to IMP4 (predicted) rn
RG-U34B:RC_AA965151_AT Similar to IMP4 (predicted) rn
YEAST_2:1779535_AT Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs Sc
Protein Similarities
Method ID Description E-Value
blast CAB05841 Hypothetical protein ZK795.3 [Caenorhabditis elegans] ref|NP_502404.1| ZK795.3 [Caenorhabditis elegans] sp|O62518|YHPK_CAEEL Hypothetical protein ZK795.3 in chromosome IV 1.0E-157
blast CAE67910 Hypothetical protein CBG13507 [Caenorhabditis briggsae] 1.0E-146
blast AAH75765 IMP4, U3 small nucleolar ribonucleoprotein, homolog [Danio rerio] ref|NP_001002719.1| IMP4, U3 small nucleolar ribonucleoprotein, homolog [Danio rerio] 6.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR007109 EMBL-EBI Brix domain 2.1E-86
Sequence
Target Sequence 
>C. ELEGANS:186614_AT
tcccgtgatccatcaagtcggctgaaaatgttcgccaaggagatgaagctcatctttcca
aacgcacagagaatcaatcgtggtcattatgatgttaagcaagttgtgcaagcgtccaag
gctcaagattcaacggatctgattatcttcacggagacacgtggaaatccagatggaatg
cttgtttgtcatcttccattcggtccaactgcattcttttcaatggcaaatgtcgtaatg
cgacacgatattccaaattgtggaacaatgtccgaacagtatccacatttgattttcgac
aatttaaattcgaaattgggacatcgtttcaccacaatcctcaaacacttgttcccggtg
ccaaaaccggattcaaagcgaatcatcacattttccaattcagaagattacatcagtttc
agacatcacgtctataaaactgaaaatgacggagaagtcgaactgactgaagctggacca
agatttgagctcaaaccctaccaaatcaagctgggaactctcgagactctggcggctgcc
gaagacgaatgggtgctcagatcctacacaaatactgcccgtaaacgtacattcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGTGATCCATCAAGTCGGCTGA 497 597 265 Antisense
GATGAAGCTCATCTTTCCAAACGCA 646 411 306 Antisense
AGTTGTGCAAGCGTCCAAGGCTCAA 299 65 366 Antisense
AATGCTTGTTTGTCATCTTCCATTC 12 167 441 Antisense
TTGGGACATCGTTTCACCACAATCC 178 709 580 Antisense
TGAGCTCAAACCCTACCAAATCAAG 503 543 750 Antisense
ATCAAGCTGGGAACTCTCGAGACTC 338 27 769 Antisense
GACTCTGGCGGCTGCCGAAGACGAA 30 375 789 Antisense
GACGAATGGGTGCTCAGATCCTACA 663 379 808 Antisense
AGATCCTACACAAATACTGCCCGTA 571 65 823 Antisense
TACTGCCCGTAAACGTACATTCCTC 388 645 837 Antisense
Sequence Source Affymetrix Proprietary Database