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[186613_s_at]

Description ZK637.3 /REP_DB=WormBase Gene ID /WP=CE00434 /TR=SW:P30639 /GB=CAA77450.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 66      6grp_total > 09      4grp_total > 39      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 882
1 2 3 4 range
A 1776.2
(3)
P 		1225.5
(-0.9)
P 		937.1
(-3)
P 		1210.9
(-1)
P 		839
B 1701.2
(3)
P 		969.4
(-3)
P 		1024.1
(-2.6)
P 		1324.8
(-0.1)
P 		732
C 1626.8
(3)
P 		894.2
(-3)
P 		1010.1
(-2.1)
P 		1278.8
(0.1)
P 		733
avr 1701.4
(3) 		1029.7
(-2.7) 		990.4
(-3) 		1271.5
(-0.6) 		711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 754
1 2 3 4 5 6 range
A 1840.4
(3)
P 		1497.6
(0.3)
P 		1086.7
(-3)
P 		1570.8
(0.9)
P 		1222
(-1.9)
P 		1362.2
(-0.8)
P 		754
B 1482.5
(3)
P 		1350.4
(-0.2)
P 		1367.2
(0.2)
P 		1363.9
(0.1)
P 		1262.7
(-2.3)
P 		1233.6
(-3)
P 		249
C 1498.9
(0.2)
P 		1356.7
(-0.9)
P 		1635.9
(1.4)
P 		1827.6
(3)
P 		1110.7
(-3)
P 		1267.8
(-1.7)
P 		717
avr 1607.3
(3) 		1401.6
(-0) 		1363.3
(-0.6) 		1587.4
(2.7) 		1198.5
(-3) 		1287.9
(-1.7) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 646.7
(3)
P 		266
(-1.9)
P 		245
(-2.1)
P 		177.3
(-3)
P 		469
B 542.5
(3)
P 		239.4
(-3)
P 		237.3
(-3)
P 		282.3
(-2.1)
P 		305
C 538.5
(3)
P 		257.1
(-2.2)
P 		352
(-0.5)
P 		215.6
(-3)
P 		323
avr 575.9
(3) 		254.2
(-2.5) 		278.1
(-2.1) 		225.1
(-3) 		351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 339.3
(-0.9)
P 		532.6
(3)
P 		236.7
(-3)
P 		398.4
(0.3)
P 		368.8
(-0.3)
P 		331.6
(-1.1)
P 		296
B 515.8
(3)
P 		449.5
(0.8)
P 		332
(-3)
P 		361.3
(-2)
P 		513
(2.9)
P 		460
(1.2)
P 		184
C 555.6
(3)
P 		414
(-1.3)
P 		416.4
(-1.3)
P 		367.5
(-2.8)
P 		359.4
(-3)
P 		424.4
(-1)
P 		196
avr 470.2
(3) 		465.4
(2.8) 		328.4
(-3) 		375.7
(-1) 		413.7
(0.6) 		405.3
(0.3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186613_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6415
Sequence Type Exemplar sequence
Representative Public ID ZK637.3 NCBI
Target Description ZK637.3 /REP_DB=WormBase Gene ID /WP=CE00434 /TR=SW:P30639 /GB=CAA77450.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066562 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-256) (tag-256) mRNA, complete cds. 11/11 None
SNAP00000013200 ENSEMBL cdna:SNAP chromosome:CEL140:III:8890138:8893777:1 11/11 None
GENEFINDER00000013227 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8890138:8893777:1 11/11 None
ZK637.3 ENSEMBL cdna:known chromosome:CEL140:III:8890133:8894108:1 gene:ZK637.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8890133-8893773(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-256
Ensembl ZK637.3
Entrez Gene 176253 Entrez gene
SwissProt P30639 EMBL-EBI
WormBase CE00434 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586357_AT similar to T-cell immunomodulatory protein cfa
CANINE_2:CFA.8553.1.A1_AT similar to T-cell immunomodulatory protein cfa
CANINE_2:CFA.8553.1.A1_S_AT similar to T-cell immunomodulatory protein cfa
CANINE_2:CFAAFFX.16015.1.S1_AT similar to T-cell immunomodulatory protein cfa
DROSOPHILA_2:1637601_AT dm
DROSGENOME1:148809_AT dm
CHICKEN:GGA.2662.1.S1_AT similar to T-cell immunomodulatory protein gga
CHICKEN:GGAAFFX.11961.1.S1_S_AT similar to T-cell immunomodulatory protein gga
HG-U133_PLUS_2:221449_S_AT T-cell immunomodulatory protein hs
HG-U133A:221449_S_AT T-cell immunomodulatory protein hs
HG-U133A_2:221449_S_AT T-cell immunomodulatory protein hs
HU35KSUBA:RC_AA446666_AT T-cell immunomodulatory protein hs
U133_X3P:G13540566_3P_S_AT T-cell immunomodulatory protein hs
U133_X3P:HS2.376409.1.A1_3P_S_AT T-cell immunomodulatory protein hs
HG-U95B:57116_AT T-cell immunomodulatory protein hs
HU35KSUBB:RC_H73004_AT T-cell immunomodulatory protein hs
U133_X3P:HS2.376409.1.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS2.350962.1.S1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.268982.0.A1_3P_X_AT T-cell immunomodulatory protein hs
U133_X3P:1556151_3P_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:1556151_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:1562899_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:242643_X_AT T-cell immunomodulatory protein hs
HG-U133B:242643_X_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:227191_AT T-cell immunomodulatory protein hs
HG-U133B:227191_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:238775_AT T-cell immunomodulatory protein hs
HG-U133B:238775_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:239044_AT T-cell immunomodulatory protein hs
HG-U133B:239044_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:241159_X_AT T-cell immunomodulatory protein hs
HG-U133B:241159_X_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:241226_AT T-cell immunomodulatory protein hs
HG-U133B:241226_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:243025_AT T-cell immunomodulatory protein hs
HG-U133B:243025_AT T-cell immunomodulatory protein hs
HG-U133_PLUS_2:243470_AT T-cell immunomodulatory protein hs
HG-U133B:243470_AT T-cell immunomodulatory protein hs
HG-U95B:47337_AT T-cell immunomodulatory protein hs
HG-U95C:56316_F_AT T-cell immunomodulatory protein hs
HG-U95C:56318_R_AT T-cell immunomodulatory protein hs
HG-U95C:59635_AT T-cell immunomodulatory protein hs
HG-U95C:63161_AT T-cell immunomodulatory protein hs
HG-U95E:69255_AT T-cell immunomodulatory protein hs
HG-U95E:76588_AT T-cell immunomodulatory protein hs
HG-U95D:87048_AT T-cell immunomodulatory protein hs
HU35KSUBA:RC_AA421149_AT T-cell immunomodulatory protein hs
HU35KSUBB:RC_AA088438_AT T-cell immunomodulatory protein hs
HU35KSUBB:RC_R11498_AT T-cell immunomodulatory protein hs
HU35KSUBC:RC_AA426026_AT T-cell immunomodulatory protein hs
HU35KSUBC:RC_AA447568_AT T-cell immunomodulatory protein hs
HU35KSUBC:RC_H96658_AT T-cell immunomodulatory protein hs
HU35KSUBA:RC_AA055404_F_AT T-cell immunomodulatory protein hs
HU35KSUBA:RC_AA055404_I_AT T-cell immunomodulatory protein hs
HU35KSUBD:RC_AA455951_AT T-cell immunomodulatory protein hs
U133_X3P:HS.129600.0.S1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.150667.0.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.196461.0.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.23047.1.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.270854.0.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.300070.0.A1_3P_AT T-cell immunomodulatory protein hs
U133_X3P:HS.58893.0.A1_3P_AT T-cell immunomodulatory protein hs
MG-U74AV2:93529_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOE430A:1435637_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOUSE430A_2:1435637_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOUSE430_2:1435637_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOE430A:1419041_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOUSE430A_2:1419041_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MOUSE430_2:1419041_AT DNA segment, Chr 8, Wayne State University 49, expressed mm
MG-U74BV2:113539_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
MOE430B:1441736_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
MOUSE430_2:1441736_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
MG-U74AV2:93530_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
MU19KSUBC:TC40629_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
MU19KSUBC:TC41459_AT DNA segment, Chr 8, Wayne State University 49, expressed, mRNA (cDNA clone MGC:7443 IMAGE:3489518) mm
RG-U34C:RC_AI102032_AT T-cell immunomodulatory protein rn
RG-U34C:RC_AI230037_AT T-cell immunomodulatory protein rn
RAE230A:1367716_AT T-cell immunomodulatory protein rn
RAT230_2:1367716_AT T-cell immunomodulatory protein rn
Protein Similarities
Method ID Description E-Value
blast CAA77450 Hypothetical protein ZK637.3 [Caenorhabditis elegans] ref|NP_498963.1| Temporarily Assigned Gene name family member (tag-256) [Caenorhabditis elegans] sp|P30639|YOU3_CAEEL Hypothetical protein ZK637.3 in chromosome III 0.0
blast CAE57612 Hypothetical protein CBG00593 [Caenorhabditis briggsae] 0.0
blast CAG31517 hypothetical protein [Gallus gallus] ref|NP_001005840.1| similar to T-cell immunomodulatory protein [Gallus gallus] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000413 EMBL-EBI Integrins alpha chain 2.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498963.1 1 553-575
ZK637.3 1 553-575
SNAP00000013200 1 553-575
GENEFINDER00000013227 1 553-575
Sequence
Target Sequence 
>C. ELEGANS:186613_S_AT
gtggtcagacacgttttggattcatctactgccctgataaaggagatacaacattcttga
aagttcaagttttcacaggagtttgcagtgatcgatgcaatccaaaatcaaacgagattg
gatcgagtatcagtatgactggtgcatgtgcttctttctcaatgacagatggatggggag
gtagtacacagagtgtagcatgtcaagttccggcttcatcaaatagagcactttatctcc
catttttgttgtatggtcttggaagaagtccaaattttgtggatgagttgaatattgcca
ttccgaaatacgcagatcgtaaagaagattggaaacacagtcttaaacagattgttccaa
attctcggattattgttctcccaccatcggatcaatatccacactggacgagtcggctct
acgtcacaccatcagctcttattgttcagagtcttgccgtcattgctctcgtatgctgta
tgcttctaatggttgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCAGACACGTTTTGGATTCAT 386 489 1232 Antisense
TGGATTCATCTACTGCCCTGATAAA 218 551 1248 Antisense
TGACTGGTGCATGTGCTTCTTTCTC 447 571 1367 Antisense
ATGTCAAGTTCCGGCTTCATCAAAT 629 47 1431 Antisense
AAATAGAGCACTTTATCTCCCATTT 275 117 1452 Antisense
AATTCTCGGATTATTGTTCTCCCAC 191 177 1591 Antisense
TTCTCCCACCATCGGATCAATATCC 118 693 1607 Antisense
ACACTGGACGAGTCGGCTCTACGTC 5 109 1632 Antisense
GTCACACCATCAGCTCTTATTGTTC 207 465 1654 Antisense
GTCATTGCTCTCGTATGCTGTATGC 191 467 1690 Antisense
GCTGTATGCTTCTAATGGTTGTCGT 489 295 1706 Antisense
Sequence Source Affymetrix Proprietary Database