[Home] | [Total List]

[186612_at]

Description Y102A5C.19 /REP_DB=WormBase Gene ID /WP=CE20391 /TR=Q9XX86 /GB=CAA20949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 40      4grp_total > 38      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 281.1
(1.2)
P 		308.3
(3)
P 		278.2
(1)
P 		216.5
(-3)
P 		92
B 292.7
(3)
P 		229.4
(-0.8)
P 		193
(-3)
P 		258.3
(0.9)
P 		100
C 301.3
(3)
P 		178.4
(-3)
P 		211.6
(-1.4)
P 		252.1
(0.6)
P 		123
avr 291.7
(3) 		238.7
(-2) 		227.6
(-3) 		242.3
(-1.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 294.3
(1.7)
P 		242.9
(0.2)
P 		336.5
(3)
P 		277.4
(1.2)
P 		198.1
(-1.2)
P 		138.2
(-3)
P 		198
B 227.4
(-1)
P 		263.3
(0.1)
P 		362.4
(3)
P 		321.6
(1.8)
P 		164.8
(-2.9)
P 		160.4
(-3)
P 		202
C 218.4
(-1.2)
P 		305.2
(0.9)
P 		279.1
(0.3)
P 		393.4
(3)
P 		191.3
(-1.8)
P 		143.2
(-3)
P 		250
avr 246.7
(0.3) 		270.5
(1) 		326
(2.8) 		330.8
(3) 		184.7
(-1.8) 		147.3
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 102.3
(3)
P 		66.9
(-0)
P 		72.7
(0.5)
P 		31.7
(-3)
P 		71
B 93.3
(3)
P 		56.7
(-1.5)
P 		44.7
(-3)
P 		55
(-1.7)
P 		49
C 99.7
(3)
P 		51.3
(-2.1)
P 		73.7
(0.3)
P 		42.5
(-3)
P 		57
avr 98.4
(3) 		58.3
(-1.4) 		63.7
(-0.8) 		43.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 54.3
(-0.7)
P 		86.4
(3)
P 		73.3
(1.5)
P 		70.4
(1.2)
P 		59.8
(-0)
P 		33.7
(-3)
P 		53
B 79.1
(1.1)
P 		87.6
(2.9)
P 		88
(3)
P 		85.2
(2.4)
P 		67
(-1.5)
P 		59.8
(-3)
P 		28
C 81
(1.4)
P 		93.1
(3)
P 		71
(0.1)
P 		79.1
(1.1)
P 		61.9
(-1.1)
P 		47.9
(-3)
P 		45
avr 71.5
(0.5) 		89
(3) 		77.4
(1.3) 		78.2
(1.5) 		62.9
(-0.7) 		47.1
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12641
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.19 NCBI
Target Description Y102A5C.19 /REP_DB=WormBase Gene ID /WP=CE20391 /TR=Q9XX86 /GB=CAA20949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074889 NCBI Caenorhabditis elegans Y102A5C.19 (Y102A5C.19) mRNA, complete cds. 11/11 None
SNAP00000003158 ENSEMBL cdna:SNAP chromosome:CEL140:V:16959753:16971125:1 11/11 None
GENEFINDER00000003188 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16969492:16971125:1 11/11 None
Y102A5C.19 ENSEMBL cdna:known chromosome:CEL140:V:16969492:16971125:1 gene:Y102A5C.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16969491-16971125(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.19
Entrez Gene 190842 Entrez gene
SwissProt Q9XX86 EMBL-EBI
WormBase CE20391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20949 Hypothetical protein Y102A5C.19 [Caenorhabditis elegans] ref|NP_507290.1| Y102A5C.19 [Caenorhabditis elegans] 1.0E-168
blast CAA20949 Hypothetical protein Y102A5C.19 [Caenorhabditis elegans] ref|NP_507290.1| Y102A5C.19 [Caenorhabditis elegans] 1.0E-155
blast CAA20959 Hypothetical protein Y102A5C.16 [Caenorhabditis elegans] ref|NP_507288.2| Y102A5C.16 [Caenorhabditis elegans] 8.0E-44
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 3.0E-32
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-45
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-45
Sequence
Target Sequence 
>C. ELEGANS:186612_AT
gaatttctgatacagctggctaccaacaattttaatgaaagaaaaatcattttaaaggca
attgagtcatttttcgaatccttaaacttcaagttaaaagcgaaaaaagtgattatcgat
gacttcaccgcccgtgaagtttctgaaatacttcagaagttcgaacctgaaattctcgaa
gaaataactctccaagctcaattcctaaagtactatgagccgataaatggcgttgtggaa
ctcgagcaatggaagaaagctaaaattctgaacaaccggtccaagtttctgatccctatt
aagcatattgtaaatttcactcaatttgacataaatgtgaaggatctgacgacggatgat
gcattggagattagagatattctcataaaatccttgacactggaatctggctacttccga
tccgtcattgccaactctgtcgcaattccaagtgtttttgaacccgatcatcttttcagg
aaatttgcacttttcgaattcaaaactccacgctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCTGATACAGCTGGCTACCA 592 325 346 Antisense
GAGTCATTTTTCGAATCCTTAAACT 372 399 409 Antisense
GTGATTATCGATGACTTCACCGCCC 529 483 454 Antisense
TCACCGCCCGTGAAGTTTCTGAAAT 245 625 470 Antisense
TAACTCTCCAAGCTCAATTCCTAAA 216 639 530 Antisense
AATGGCGTTGTGGAACTCGAGCAAT 571 161 571 Antisense
GAACAACCGGTCCAAGTTTCTGATC 236 351 615 Antisense
ACTGGAATCTGGCTACTTCCGATCC 13 97 744 Antisense
CCAACTCTGTCGCAATTCCAAGTGT 80 277 776 Antisense
GAACCCGATCATCTTTTCAGGAAAT 418 345 805 Antisense
TTCGAATTCAAAACTCCACGCTGTG 12 691 838 Antisense
Sequence Source Affymetrix Proprietary Database