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[186610_s_at]

Description C17G10.4A /REP_DB=WormBase Gene ID /WP=CE16860 /TR=P81299 /GB=AAB93457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 582.8
(3)
P 		238.4
(-1.9)
P 		162.7
(-3)
M 		310.6
(-0.9)
P 		420
B 567.9
(3)
P 		324.8
(-0.3)
M 		124.7
(-3)
P 		272.4
(-1)
P 		443
C 496.2
(3)
P 		257.8
(-0.6)
P 		101.5
(-3)
P 		270.7
(-0.4)
P 		395
avr 549
(3) 		273.7
(-0.9) 		129.6
(-3) 		284.6
(-0.8) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 542.1
(3)
P 		421.8
(0.9)
P 		195
(-3)
P 		288.5
(-1.4)
P 		245.6
(-2.1)
P 		306.6
(-1.1)
P 		347
B 521
(3)
P 		334.9
(0)
P 		284.1
(-0.8)
P 		228
(-1.7)
P 		144.7
(-3)
P 		233.8
(-1.6)
P 		376
C 526.1
(3)
P 		368.2
(0.6)
P 		270.1
(-0.8)
P 		203.6
(-1.8)
P 		124.6
(-3)
P 		379.7
(0.8)
P 		402
avr 529.7
(3) 		375
(0.4) 		249.7
(-1.7) 		240
(-1.9) 		171.6
(-3) 		306.7
(-0.7) 		358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 212.2
(3)
P 		51.8
(-2.7)
P 		42.5
(-3)
M 		45.5
(-2.9)
P 		170
B 181.1
(3)
P 		80.2
(-1)
M 		28.9
(-3)
P 		58
(-1.9)
P 		152
C 164.3
(3)
P 		74.1
(-1.2)
P 		35.4
(-3)
P 		45.6
(-2.5)
P 		129
avr 185.9
(3) 		68.7
(-1.7) 		35.6
(-3) 		49.7
(-2.4) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 99.9
(0.2)
P 		150
(3)
P 		42.5
(-3)
P 		73.2
(-1.3)
P 		74.1
(-1.2)
P 		74.6
(-1.2)
P 		108
B 181.3
(3)
P 		111.5
(-0.4)
P 		69
(-2.5)
P 		60.4
(-2.9)
P 		58.8
(-3)
P 		87.2
(-1.6)
P 		123
C 195
(3)
P 		112.3
(-0.2)
P 		68.8
(-1.9)
P 		40.9
(-3)
P 		40.3
(-3)
P 		127.1
(0.4)
P 		155
avr 158.7
(3) 		124.6
(1) 		60.1
(-2.9) 		58.2
(-3) 		57.7
(-3) 		96.3
(-0.7) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186610_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5863
Sequence Type Exemplar sequence
Representative Public ID C17G10.4A NCBI
Target Description C17G10.4A /REP_DB=WormBase Gene ID /WP=CE16860 /TR=P81299 /GB=AAB93457.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170993(11), NM_001026798(10), NM_062684(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170993 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
NM_001026798 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 10/11 None
NM_062684 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 10/11 None
GENEFINDER00000029033 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5589534:5593343:-1 10/11 None
C17G10.4d ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593343:-1 gene:C17G10.4 11/11 A 
C17G10.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593395:-1 gene:C17G10.4 10/11 None
C17G10.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593397:-1 gene:C17G10.4 10/11 None
C17G10.4e ENSEMBL cdna:known chromosome:CEL140:II:5589219:5593343:-1 gene:C17G10.4 10/11 A 
C17G10.4a ENSEMBL cdna:known chromosome:CEL140:II:5589563:5593343:-1 gene:C17G10.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173945 5 3 NM_001026798 173747_at (11), 186610_s_at (10)
NM_062683 186608_s_at (11), 186698_s_at (11)
NM_062684 186610_s_at (10)
NM_062685 174820_s_at (11), 186698_s_at (11)
NM_170993 173747_at (11), 186610_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5589531-5593341(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74545 CDC-14 phosphatase isoform D [Caenorhabditis elegans] gb|AAM54206.1| Cell division cycle related protein 14, isoform d [Caenorhabditis elegans] ref|NP_740991.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
blast AAT74542 CDC-14 phosphatase isoform A [Caenorhabditis elegans] gb|AAM54205.1| Cell division cycle related protein 14, isoform a [Caenorhabditis elegans] ref|NP_495085.2| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
blast T34098 hypothetical protein C17G10.4a - Caenorhabditis elegans 0.0
blast AAT74546 CDC-14 phosphatase isoform E [Caenorhabditis elegans] gb|AAT68903.1| Cell division cycle related protein 14, isoform e [Caenorhabditis elegans] ref|NP_001021969.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029033 1 762-784
Sequence
Target Sequence 
>C. ELEGANS:186610_S_AT
agccttcaaccacagataaccaaatgctctttgactgctgaaagcaagccaccaaagcgg
atactctcaatgccagggacttctaaatctacgtcctctctcaaaaaaattcaagtctcc
cgaccaagaccgtatccatcaacaggggttcgtgtagagctatgtgccaatgggaaaagc
tatgatattagaccaaggaaagaagctcacgttattcctggagctggtctcgcagcgaat
acagaagctcttttaggggctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCTTCAACCACAGATAACCAAAT 593 83 1813 Antisense
AACCAAATGCTCTTTGACTGCTGAA 587 147 1830 Antisense
AAAGCAAGCCACCAAAGCGGATACT 352 123 1853 Antisense
GATACTCTCAATGCCAGGGACTTCT 696 423 1872 Antisense
GGGACTTCTAAATCTACGTCCTCTC 219 491 1888 Antisense
TCTACGTCCTCTCTCAAAAAAATTC 511 613 1900 Antisense
GACCAAGACCGTATCCATCAACAGG 305 383 1934 Antisense
GGGGTTCGTGTAGAGCTATGTGCCA 30 499 1957 Antisense
GAAAGAAGCTCACGTTATTCCTGGA 421 359 2010 Antisense
TTCCTGGAGCTGGTCTCGCAGCGAA 343 697 2027 Antisense
ACAGAAGCTCTTTTAGGGGCTCAAT 513 107 2053 Antisense
Sequence Source Affymetrix Proprietary Database