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[186608_s_at]

Description C17G10.4B /REP_DB=WormBase Gene ID /WP=CE08287 /TR=Q09976 /GB=AAB93459.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 77.7
(-0.4)
P 		39.6
(-3)
A 		70.1
(-0.9)
P 		128.4
(3)
P 		89
B 84.6
(-2.1)
P 		68.4
(-3)
P 		107.3
(-0.8)
P 		172.8
(3)
P 		104
C 96.3
(-2.1)
P 		96.7
(-2.1)
P 		80.2
(-3)
P 		189.9
(3)
P 		110
avr 86.2
(-1.9) 		68.2
(-3) 		85.9
(-1.9) 		163.7
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 89.7
(-3)
P 		114.7
(-2.5)
P 		144.7
(-1.9)
P 		229.5
(-0.3)
P 		316.6
(1.4)
P 		397.3
(3)
P 		308
B 34.6
(-3)
P 		87.2
(-2.3)
P 		156.2
(-1.4)
P 		153.9
(-1.4)
P 		388.1
(1.6)
P 		494.4
(3)
P 		460
C 85.9
(-3)
P 		87.4
(-3)
P 		104.5
(-2.7)
P 		117.9
(-2.5)
P 		362.3
(1)
P 		496.4
(3)
P 		411
avr 70.1
(-3) 		96.4
(-2.6) 		135.1
(-2) 		167.1
(-1.5) 		355.7
(1.4) 		462.7
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 28.3
(3)
P 		8.6
(-3)
A 		18.3
(-0)
P 		18.8
(0.1)
P 		20
B 27
(0)
P 		16.9
(-3)
P 		24.9
(-0.6)
P 		36.8
(3)
P 		20
C 31.9
(2.9)
P 		27.8
(-3)
P 		28
(-2.7)
P 		32
(3)
P 		4
avr 29.1
(2.9) 		17.8
(-3) 		23.7
(0.1) 		29.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 16.5
(-3)
P 		40.8
(-1.2)
P 		31.5
(-1.9)
P 		58.2
(0.1)
P 		95.5
(2.9)
P 		96.7
(3)
P 		80
B 12
(-3)
P 		29
(-2.4)
P 		37.9
(-2.1)
P 		40.8
(-2)
P 		157.7
(2.1)
P 		184.4
(3)
P 		172
C 31.9
(-2.7)
P 		26.7
(-2.9)
P 		26.6
(-2.9)
P 		23.7
(-3)
P 		117.2
(0.9)
P 		166.2
(3)
P 		143
avr 20.1
(-3) 		32.2
(-2.4) 		32
(-2.4) 		40.9
(-2) 		123.5
(1.8) 		149.1
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186608_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5829
Sequence Type Exemplar sequence
Representative Public ID C17G10.4B NCBI
Target Description C17G10.4B /REP_DB=WormBase Gene ID /WP=CE08287 /TR=Q09976 /GB=AAB93459.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062683 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
SNAP00000029020 ENSEMBL cdna:SNAP chromosome:CEL140:II:5587673:5588978:-1 11/11 None
GENEFINDER00000029034 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5587673:5588978:-1 11/11 None
C17G10.4b ENSEMBL cdna:known chromosome:CEL140:II:5587609:5593343:-1 gene:C17G10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173945 5 1 NM_001026798 173747_at (11), 186610_s_at (10)
NM_062683 186608_s_at (11), 186698_s_at (11)
NM_062684 186610_s_at (10)
NM_062685 174820_s_at (11), 186698_s_at (11)
NM_170993 173747_at (11), 186610_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5587670-5593341(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74543 CDC-14 phosphatase isoform B [Caenorhabditis elegans] gb|AAB93459.1| Cell division cycle related protein 14, isoform b [Caenorhabditis elegans] ref|NP_495084.3| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] sp|P81299|CDC14_CAEEL Probable tyrosine-protein phosphatase cdc-14 (Cell division cycle-related protein 14) pir||T34097 probable protein-tyrosine-phosphatase (EC 3.1.3.48) CDC14 - Caenorhabditis elegans 0.0
blast CAE59147 Hypothetical protein CBG02452 [Caenorhabditis briggsae] 0.0
blast AAT74544 CDC-14 phosphatase isoform C [Caenorhabditis elegans] gb|AAB93458.1| Cell division cycle related protein 14, isoform c [Caenorhabditis elegans] ref|NP_495086.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] gb|AAB94407.1| protein phosphatase CDC14 [Caenorhabditis elegans] pir||E88158 protein C17G10.4c [imported] - Caenorhabditis elegans 0.0
blast CAE59147 Hypothetical protein CBG02452 [Caenorhabditis briggsae] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.4E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.4E-21
Sequence
Target Sequence 
>C. ELEGANS:186608_S_AT
taaaccatccagaagccggggctgtgaccggtccaataataaaagaagaggatattccat
ttgaagagactgtcgagtgttcatccacgactgctgtgaatggaattttacctaaatgtt
tccgacagccgagaaaacagaaacttgaagaagattcgtgttcatcttcaattcttcgaa
ttatcaagaaaaccacacccagtcttccaaatagatcatatacaatgattaaccaaaaca
tggaacatccactacaatgctgctactgcttggaagtgtacgaaaagcgatacatgacgc
aagttccaaaaaccgagcaacgaattgccagatgggtggcaatattaggagaacaattcc
gtatacgtcttcgaatgaaacctgcaaattacatgtgtcgaaaacatttcccgcaagcgg
atttcagttctcgtggacgacttcttaaaacagctgttccaaatgttgtttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACCATCCAGAAGCCGGGGCTGT 58 637 2615 Antisense
GACTGTCGAGTGTTCATCCACGACT 583 375 2682 Antisense
TACCTAAATGTTTCCGACAGCCGAG 318 641 2723 Antisense
ATTCGTGTTCATCTTCAATTCTTCG 360 9 2768 Antisense
CCACACCCAGTCTTCCAAATAGATC 673 275 2807 Antisense
CATCCACTACAATGCTGCTACTGCT 97 211 2860 Antisense
GAACAATTCCGTATACGTCTTCGAA 13 351 2965 Antisense
GTGTCGAAAACATTTCCCGCAAGCG 357 487 3009 Antisense
CAAGCGGATTTCAGTTCTCGTGGAC 320 185 3028 Antisense
GACGACTTCTTAAAACAGCTGTTCC 89 379 3050 Antisense
CAGCTGTTCCAAATGTTGTTTCCCA 412 203 3065 Antisense
Sequence Source Affymetrix Proprietary Database